(37 nodes) Mixed, incl. OAR domain, and LIM domain network (Otolemur garnettii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LHX3	LIM homeobox 3. (402 aa)
	ISL2	ISL LIM homeobox 2. (359 aa)
	LMO4	LIM domain only 4. (165 aa)
	LDB2	LIM domain binding 2. (373 aa)
	SSBP2	Single stranded DNA binding protein 2. (267 aa)
	FEZF1	FEZ family zinc finger 1. (470 aa)
	LHX2	LIM homeobox 2. (407 aa)
	LHX5	LIM homeobox 5. (402 aa)
	BARHL1	BarH like homeobox 1. (327 aa)
	LHX9	LIM homeobox 9. (397 aa)
	TBX18	T-box transcription factor 18. (596 aa)
	TBX15	T-box transcription factor 15. (534 aa)
	HINFP	Histone H4 transcription factor. (519 aa)
	SSBP4	Single stranded DNA binding protein 4. (385 aa)
	SHOX2	Short stature homeobox 2. (328 aa)
	OTP	Orthopedia homeobox. (325 aa)
	NHLH1	Nescient helix-loop-helix 1. (133 aa)
	LMX1A	LIM homeobox transcription factor 1 alpha. (295 aa)
	TLX1	T cell leukemia homeobox 1. (332 aa)
	LHX1	LIM homeobox 1. (407 aa)
	ALX1	ALX homeobox 1. (326 aa)
	FERD3L	Fer3 like bHLH transcription factor. (167 aa)
	TLX2	T cell leukemia homeobox 2. (284 aa)
	LHX4	LIM homeobox 4. (390 aa)
	SSBP3	Single stranded DNA binding protein 3. (278 aa)
	H0XIR4_OTOGA	Homeobox domain-containing protein. (230 aa)
	ALX4	ALX homeobox 4. (407 aa)
	H0XLZ0_OTOGA	Homeobox domain-containing protein. (217 aa)
	TLX3	T cell leukemia homeobox 3. (291 aa)
	MAB21L2	Mab-21 like 2. (359 aa)
	ARX	Aristaless related homeobox. (533 aa)
	H0XT64_OTOGA	Homeobox domain-containing protein. (153 aa)
	LMO3	LIM domain only 3. (166 aa)
	ISL1	ISL LIM homeobox 1. (361 aa)
	ALX3	ALX homeobox 3. (343 aa)
	SHOX	Short stature homeobox. (289 aa)
	HMX3	H6 family homeobox 3. (342 aa)

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX1	LDB2	ENSOGAP00000012734	ENSOGAP00000002195	ALX homeobox 1.	LIM domain binding 2.	0.679
ALX1	LHX3	ENSOGAP00000012734	ENSOGAP00000000647	ALX homeobox 1.	LIM homeobox 3.	0.457
ALX1	LHX4	ENSOGAP00000012734	ENSOGAP00000014383	ALX homeobox 1.	LIM homeobox 4.	0.457
ALX3	BARHL1	ENSOGAP00000021244	ENSOGAP00000003627	ALX homeobox 3.	BarH like homeobox 1.	0.414
ALX3	FERD3L	ENSOGAP00000021244	ENSOGAP00000013234	ALX homeobox 3.	Fer3 like bHLH transcription factor.	0.489
ALX3	LDB2	ENSOGAP00000021244	ENSOGAP00000002195	ALX homeobox 3.	LIM domain binding 2.	0.829
ALX3	LHX3	ENSOGAP00000021244	ENSOGAP00000000647	ALX homeobox 3.	LIM homeobox 3.	0.858
ALX3	LHX4	ENSOGAP00000021244	ENSOGAP00000014383	ALX homeobox 3.	LIM homeobox 4.	0.858
ALX3	LMO4	ENSOGAP00000021244	ENSOGAP00000002047	ALX homeobox 3.	LIM domain only 4.	0.459
ALX3	LMX1A	ENSOGAP00000021244	ENSOGAP00000010134	ALX homeobox 3.	LIM homeobox transcription factor 1 alpha.	0.426
ALX3	SSBP2	ENSOGAP00000021244	ENSOGAP00000002280	ALX homeobox 3.	Single stranded DNA binding protein 2.	0.477
ALX3	SSBP3	ENSOGAP00000021244	ENSOGAP00000014844	ALX homeobox 3.	Single stranded DNA binding protein 3.	0.477
ALX3	SSBP4	ENSOGAP00000021244	ENSOGAP00000006649	ALX homeobox 3.	Single stranded DNA binding protein 4.	0.477
ALX4	LDB2	ENSOGAP00000016781	ENSOGAP00000002195	ALX homeobox 4.	LIM domain binding 2.	0.679
ALX4	LHX3	ENSOGAP00000016781	ENSOGAP00000000647	ALX homeobox 4.	LIM homeobox 3.	0.457
ALX4	LHX4	ENSOGAP00000016781	ENSOGAP00000014383	ALX homeobox 4.	LIM homeobox 4.	0.457
ARX	H0XIR4_OTOGA	ENSOGAP00000018740	ENSOGAP00000016004	Aristaless related homeobox.	Homeobox domain-containing protein.	0.718
ARX	H0XT64_OTOGA	ENSOGAP00000018740	ENSOGAP00000019306	Aristaless related homeobox.	Homeobox domain-containing protein.	0.589
ARX	LDB2	ENSOGAP00000018740	ENSOGAP00000002195	Aristaless related homeobox.	LIM domain binding 2.	0.679
ARX	LHX3	ENSOGAP00000018740	ENSOGAP00000000647	Aristaless related homeobox.	LIM homeobox 3.	0.476