35 items (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PBX1	PBX homeobox 1. (430 aa)
	LMX1B	LIM homeobox transcription factor 1 beta. (402 aa)
	MEIS3	Meis homeobox 3. (424 aa)
	PKNOX2	PBX/knotted 1 homeobox 2. (472 aa)
	HOXC9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (263 aa)
	HOXC8	Homeobox C8. (250 aa)
	HOXC6	Homeobox C6. (235 aa)
	HOXC5	Homeobox C5. (222 aa)
	PKNOX1	PBX/knotted 1 homeobox 1. (438 aa)
	MAB21L1	Mab-21 like 1. (359 aa)
	MEIS2	Meis homeobox 2. (477 aa)
	PBX4	PBX homeobox 4. (341 aa)
	HOXB6	Homeobox B6. (224 aa)
	HOXB7	Homeobox B7. (219 aa)
	HOXB9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (321 aa)
	HOXA1	Homeobox A1 isoform a (Predicted). (335 aa)
	HOXA6	Homeobox A6 (Predicted). (233 aa)
	MEIS1	Meis homeobox 1. (454 aa)
	HOXD10	Homeobox D10. (340 aa)
	HOXD9	Homeobox D9. (354 aa)
	HOXD8	Homeobox D8. (290 aa)
	HOXD3	Homeobox D3. (432 aa)
	HOXD1	Homeobox D1. (325 aa)
	PBX2	PBX homeobox 2. (430 aa)
	HOXB1	Homeobox B1. (301 aa)
	HOXB5	Homeobox B5. (269 aa)
	HOXB13	Homeobox B13. (284 aa)
	HOXD11	Homeobox D11. (320 aa)
	TSHZ3	Teashirt zinc finger homeobox 3. (1082 aa)
	HOXB8	Homeobox B8. (249 aa)
	HOXB4	Homeobox B4. (251 aa)
	HOXC4	Homeobox C4. (264 aa)
	HOXD4	Homeobox D4. (260 aa)
	HOXA7	Homeobox A7 (Predicted). (226 aa)
	PBX3	PBX homeobox 3. (359 aa)

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOXA1	HOXB1	ENSOGAP00000011070	ENSOGAP00000015487	Homeobox A1 isoform a (Predicted).	Homeobox B1.	0.857
HOXA1	HOXD1	ENSOGAP00000011070	ENSOGAP00000014077	Homeobox A1 isoform a (Predicted).	Homeobox D1.	0.835
HOXA1	HOXD10	ENSOGAP00000011070	ENSOGAP00000014060	Homeobox A1 isoform a (Predicted).	Homeobox D10.	0.415
HOXA1	MEIS1	ENSOGAP00000011070	ENSOGAP00000013789	Homeobox A1 isoform a (Predicted).	Meis homeobox 1.	0.420
HOXA1	PBX1	ENSOGAP00000011070	ENSOGAP00000000116	Homeobox A1 isoform a (Predicted).	PBX homeobox 1.	0.757
HOXA1	PBX2	ENSOGAP00000011070	ENSOGAP00000014595	Homeobox A1 isoform a (Predicted).	PBX homeobox 2.	0.757
HOXA1	PBX3	ENSOGAP00000011070	ENSOGAP00000022557	Homeobox A1 isoform a (Predicted).	PBX homeobox 3.	0.757
HOXA1	PBX4	ENSOGAP00000011070	ENSOGAP00000006666	Homeobox A1 isoform a (Predicted).	PBX homeobox 4.	0.757
HOXA6	HOXA7	ENSOGAP00000011080	ENSOGAP00000021657	Homeobox A6 (Predicted).	Homeobox A7 (Predicted).	0.747
HOXA6	HOXB4	ENSOGAP00000011080	ENSOGAP00000018667	Homeobox A6 (Predicted).	Homeobox B4.	0.757
HOXA6	HOXB5	ENSOGAP00000011080	ENSOGAP00000016130	Homeobox A6 (Predicted).	Homeobox B5.	0.821
HOXA6	HOXB6	ENSOGAP00000011080	ENSOGAP00000007763	Homeobox A6 (Predicted).	Homeobox B6.	0.762
HOXA6	HOXB7	ENSOGAP00000011080	ENSOGAP00000007767	Homeobox A6 (Predicted).	Homeobox B7.	0.783
HOXA6	HOXB9	ENSOGAP00000011080	ENSOGAP00000007769	Homeobox A6 (Predicted).	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.408
HOXA6	HOXC4	ENSOGAP00000011080	ENSOGAP00000020095	Homeobox A6 (Predicted).	Homeobox C4.	0.826
HOXA6	HOXC5	ENSOGAP00000011080	ENSOGAP00000003224	Homeobox A6 (Predicted).	Homeobox C5.	0.737
HOXA6	HOXC6	ENSOGAP00000011080	ENSOGAP00000003222	Homeobox A6 (Predicted).	Homeobox C6.	0.750
HOXA6	HOXD10	ENSOGAP00000011080	ENSOGAP00000014060	Homeobox A6 (Predicted).	Homeobox D10.	0.463
HOXA6	HOXD3	ENSOGAP00000011080	ENSOGAP00000014075	Homeobox A6 (Predicted).	Homeobox D3.	0.765
HOXA6	HOXD4	ENSOGAP00000011080	ENSOGAP00000020947	Homeobox A6 (Predicted).	Homeobox D4.	0.722