STRINGSTRING
H0WRF0_OTOGA H0WRF0_OTOGA SNRPG SNRPG SNRPB2 SNRPB2 SRSF5 SRSF5 SRSF6 SRSF6 CELF5 CELF5 NCBP1 NCBP1 SETX SETX SF3A1 SF3A1 SLU7 SLU7 USP39 USP39 SF3B5 SF3B5 SF3A3 SF3A3 CELF1 CELF1 CRNKL1 CRNKL1 GEMIN6 GEMIN6 BUD13 BUD13 H0X0J6_OTOGA H0X0J6_OTOGA SNIP1 SNIP1 GEMIN2 GEMIN2 SNRNP200 SNRNP200 SRSF12 SRSF12 SF3B4 SF3B4 H0WTS0_OTOGA H0WTS0_OTOGA SF3B2 SF3B2 SRSF10 SRSF10 LUC7L3 LUC7L3 SF3B6 SF3B6 SRSF9 SRSF9 YTHDC1 YTHDC1 SRPK3 SRPK3 H0WLK5_OTOGA H0WLK5_OTOGA SRPK2 SRPK2 KHDC4 KHDC4 PSIP1 PSIP1 CELF3 CELF3 GCFC2 GCFC2 PTBP2 PTBP2 H0WG26_OTOGA H0WG26_OTOGA H0XSR3_OTOGA H0XSR3_OTOGA H0XT46_OTOGA H0XT46_OTOGA SF3A2 SF3A2 H0XTQ5_OTOGA H0XTQ5_OTOGA SNRPD3 SNRPD3 H0XW89_OTOGA H0XW89_OTOGA SNRPD2 SNRPD2 TXNL4A TXNL4A SRSF1 SRSF1 H0XX70_OTOGA H0XX70_OTOGA SNRPC SNRPC SNRPC-2 SNRPC-2 H0XZ80_OTOGA H0XZ80_OTOGA PRPF39 PRPF39 SNRPC-3 SNRPC-3 PRPF19 PRPF19 CELF6 CELF6 H0XIR6_OTOGA H0XIR6_OTOGA RBM5 RBM5 H0XME6_OTOGA H0XME6_OTOGA NOL3 NOL3 LOC100957263 LOC100957263 SFSWAP SFSWAP FMC1-LUC7L2 FMC1-LUC7L2 SF1 SF1 SNRPB SNRPB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H0WRF0_OTOGAUncharacterized protein. (285 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (73 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
SRSF5Serine and arginine rich splicing factor 5. (270 aa)
SRSF6Serine and arginine rich splicing factor 6. (345 aa)
CELF5CUGBP Elav-like family member 5. (486 aa)
NCBP1Nuclear cap binding protein subunit 1. (792 aa)
SETXSenataxin. (2705 aa)
SF3A1Splicing factor 3a subunit 1. (793 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
USP39Ubiquitin specific peptidase 39. (488 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SF3A3Splicing factor 3a subunit 3. (401 aa)
CELF1CUGBP Elav-like family member 1. (517 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (687 aa)
GEMIN6Gem nuclear organelle associated protein 6. (167 aa)
BUD13BUD13 homolog. (616 aa)
H0X0J6_OTOGAUncharacterized protein. (191 aa)
SNIP1Smad nuclear interacting protein 1. (390 aa)
GEMIN2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (280 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
SRSF12Serine and arginine rich splicing factor 12. (240 aa)
SF3B4Splicing factor 3b subunit 4. (424 aa)
H0WTS0_OTOGARRM domain-containing protein. (326 aa)
SF3B2Splicing factor 3b subunit 2. (893 aa)
SRSF10Serine and arginine rich splicing factor 10. (223 aa)
LUC7L3LUC7 like 3 pre-mRNA splicing factor. (434 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
SRSF9Serine and arginine rich splicing factor 9. (222 aa)
YTHDC1YTH domain containing 1. (727 aa)
SRPK3SRSF protein kinase 3. (547 aa)
H0WLK5_OTOGAUncharacterized protein. (102 aa)
SRPK2Protein kinase domain-containing protein. (677 aa)
KHDC4KH domain containing 4, pre-mRNA splicing factor. (615 aa)
PSIP1PC4 and SFRS1 interacting protein 1. (529 aa)
CELF3Trinucleotide repeat containing 4 (Predicted). (564 aa)
GCFC2GC-rich sequence DNA-binding factor 2. (612 aa)
PTBP2Polypyrimidine tract binding protein 2. (540 aa)
H0WG26_OTOGASF3b1 domain-containing protein. (627 aa)
H0XSR3_OTOGAUncharacterized protein. (429 aa)
H0XT46_OTOGAUncharacterized protein. (487 aa)
SF3A2Splicing factor 3a subunit 2. (464 aa)
H0XTQ5_OTOGAUncharacterized protein. (110 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (148 aa)
H0XW89_OTOGAUncharacterized protein. (360 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SRSF1Uncharacterized protein. (256 aa)
H0XX70_OTOGAUncharacterized protein. (104 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (152 aa)
SNRPC-2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (178 aa)
H0XZ80_OTOGAUncharacterized protein. (447 aa)
PRPF39Pre-mRNA processing factor 39. (669 aa)
SNRPC-3U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
PRPF19Pre-mRNA processing factor 19. (506 aa)
CELF6Uncharacterized protein. (454 aa)
H0XIR6_OTOGAProtein kinase domain-containing protein. (578 aa)
RBM5RNA binding motif protein 5. (760 aa)
H0XME6_OTOGAUncharacterized protein. (486 aa)
NOL3Nucleolar protein 3. (218 aa)
LOC100957263Sm domain-containing protein. (86 aa)
SFSWAPSplicing factor SWAP. (848 aa)
FMC1-LUC7L2FMC1-LUC7L2 readthrough. (458 aa)
SF1Splicing factor 1 isoform 2 (Predicted). (637 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.