STRINGSTRING
SNRPD1 SNRPD1 PRPF4 PRPF4 LSM3 LSM3 PRPF31 PRPF31 SNRNP200 SNRNP200 PRPF3 PRPF3 SNRNP40 SNRNP40 SNRPE SNRPE RBM42 RBM42 SNU13 SNU13 SNRPA SNRPA ZMAT2 ZMAT2 H0WFU3_OTOGA H0WFU3_OTOGA C19orf54 C19orf54 H0XMN3_OTOGA H0XMN3_OTOGA LSM3-2 LSM3-2 LOC100957263 LOC100957263 TXNL4A TXNL4A LSM3-3 LSM3-3 LSM6-2 LSM6-2 SNRPD3 SNRPD3 SNRPD2 SNRPD2 LSM8 LSM8 EFTUD2 EFTUD2 H0X7Q6_OTOGA H0X7Q6_OTOGA USP39 USP39 TXNL4B TXNL4B H0XJX1_OTOGA H0XJX1_OTOGA H0XSL2_OTOGA H0XSL2_OTOGA LSM5 LSM5 PPIH PPIH SNRPG SNRPG SNRPB SNRPB SART1 SART1 DDX23 DDX23 LSM4 LSM4 LSM6 LSM6 H0WYE9_OTOGA H0WYE9_OTOGA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
PRPF4Pre-mRNA processing factor 4. (533 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
PRPF31PRP31 pre-mRNA processing factor 31 homolog (Predicted). (307 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
PRPF3Pre-mRNA processing factor 3. (682 aa)
SNRNP40WD_REPEATS_REGION domain-containing protein. (358 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (76 aa)
RBM42RNA binding motif protein 42. (477 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
SNRPASmall nuclear ribonucleoprotein polypeptide A. (282 aa)
ZMAT2Zinc finger matrin-type 2. (199 aa)
H0WFU3_OTOGASm domain-containing protein. (102 aa)
C19orf54Chromosome 19 open reading frame 54. (337 aa)
H0XMN3_OTOGAWD_REPEATS_REGION domain-containing protein. (331 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LOC100957263Sm domain-containing protein. (86 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
LSM3-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
LSM6-2LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (148 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (969 aa)
H0X7Q6_OTOGAU6-snRNA_bdg domain-containing protein. (129 aa)
USP39Ubiquitin specific peptidase 39. (488 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
H0XJX1_OTOGARRM domain-containing protein. (159 aa)
H0XSL2_OTOGASm domain-containing protein. (102 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (73 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (801 aa)
DDX23DEAD-box helicase 23. (820 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
LSM6Sm domain-containing protein. (80 aa)
H0WYE9_OTOGASNRNP27 domain-containing protein. (157 aa)
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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