STRINGSTRING
PRPF4 PRPF4 SNRPD1 SNRPD1 DHX16 DHX16 SNIP1 SNIP1 H0WFU3_OTOGA H0WFU3_OTOGA H0WG26_OTOGA H0WG26_OTOGA ZMAT2 ZMAT2 H0WLK5_OTOGA H0WLK5_OTOGA LSM6-2 LSM6-2 SNRPB SNRPB WBP4 WBP4 RNF113A RNF113A LSM3-3 LSM3-3 H0XX70_OTOGA H0XX70_OTOGA TXNL4A TXNL4A SNRPD2 SNRPD2 SNRPD3 SNRPD3 H0XTQ5_OTOGA H0XTQ5_OTOGA SF3A2 SF3A2 H0XSL2_OTOGA H0XSL2_OTOGA LOC100957263 LOC100957263 LSM3-2 LSM3-2 LOC100952049 LOC100952049 H0XNI6_OTOGA H0XNI6_OTOGA PRPF38B PRPF38B C19orf54 C19orf54 LSM6 LSM6 LSM4 LSM4 SNRPA1 SNRPA1 SART1 SART1 SNU13 SNU13 SNRPE SNRPE SMU1 SMU1 SF3B6 SF3B6 PRPF3 PRPF3 PRPF38A PRPF38A SF3B2 SF3B2 H0WTS0_OTOGA H0WTS0_OTOGA SF3B4 SF3B4 SNRNP200 SNRNP200 CWC27 CWC27 PRPF31 PRPF31 PRPF6 PRPF6 LSM3 LSM3 SF3B3 SF3B3 SNRPG SNRPG CWC22 CWC22 SNRPB2 SNRPB2 IK IK LSM5 LSM5 LSM8 LSM8 SF3A1 SF3A1 EFTUD2 EFTUD2 BUD13 BUD13 MFAP1 MFAP1 SF3A3 SF3A3 SF3B5 SF3B5 H0X7Q6_OTOGA H0X7Q6_OTOGA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRPF4Pre-mRNA processing factor 4. (533 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
DHX16DEAH-box helicase 16. (1044 aa)
SNIP1Smad nuclear interacting protein 1. (390 aa)
H0WFU3_OTOGASm domain-containing protein. (102 aa)
H0WG26_OTOGASF3b1 domain-containing protein. (627 aa)
ZMAT2Zinc finger matrin-type 2. (199 aa)
H0WLK5_OTOGAUncharacterized protein. (102 aa)
LSM6-2LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
WBP4WW domain binding protein 4. (383 aa)
RNF113AUncharacterized protein. (344 aa)
LSM3-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
H0XX70_OTOGAUncharacterized protein. (104 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (148 aa)
H0XTQ5_OTOGAUncharacterized protein. (110 aa)
SF3A2Splicing factor 3a subunit 2. (464 aa)
H0XSL2_OTOGASm domain-containing protein. (102 aa)
LOC100957263Sm domain-containing protein. (86 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LOC100952049Uncharacterized protein. (341 aa)
H0XNI6_OTOGAUncharacterized protein. (250 aa)
PRPF38BUncharacterized protein. (547 aa)
C19orf54Chromosome 19 open reading frame 54. (337 aa)
LSM6Sm domain-containing protein. (80 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
SNRPA1LRRcap domain-containing protein. (255 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (801 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (76 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (515 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
PRPF3Pre-mRNA processing factor 3. (682 aa)
PRPF38APre-mRNA processing factor 38A. (312 aa)
SF3B2Splicing factor 3b subunit 2. (893 aa)
H0WTS0_OTOGARRM domain-containing protein. (326 aa)
SF3B4Splicing factor 3b subunit 4. (424 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
CWC27CWC27 spliceosome associated cyclophilin. (472 aa)
PRPF31PRP31 pre-mRNA processing factor 31 homolog (Predicted). (307 aa)
PRPF6Pre-mRNA processing factor 6. (930 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SF3B3Splicing factor 3b subunit 3. (1220 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (73 aa)
CWC22CWC22 spliceosome associated protein homolog. (909 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
IKIK cytokine. (557 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
SF3A1Splicing factor 3a subunit 1. (793 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (969 aa)
BUD13BUD13 homolog. (616 aa)
MFAP1Microfibrillar-associated protein 1 (Predicted). (439 aa)
SF3A3Splicing factor 3a subunit 3. (401 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
H0X7Q6_OTOGAU6-snRNA_bdg domain-containing protein. (129 aa)
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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