25 items (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SESTD1	SEC14 and spectrin domain containing 1. (698 aa)
	ARHGAP8	Uncharacterized protein. (438 aa)
	BNIPL	BCL2 interacting protein like. (329 aa)
	MOSPD2	Motile sperm domain containing 2. (518 aa)
	RLBP1	Retinaldehyde binding protein 1. (317 aa)
	GDAP2	Ganglioside induced differentiation associated protein 2. (497 aa)
	BNIP2	BCL2 interacting protein 2. (395 aa)
	CLVS1	Clavesin 1. (354 aa)
	SEC14L1	SEC14 like lipid binding 1. (701 aa)
	MCF2	MCF.2 cell line derived transforming sequence. (1065 aa)
	MCF2L2	MCF.2 cell line derived transforming sequence-like 2. (1035 aa)
	SEC14L5	SEC14 like lipid binding 5. (668 aa)
	PTPN9	Protein tyrosine phosphatase non-receptor type 9. (583 aa)
	MCF2L	MCF.2 cell line derived transforming sequence like. (1179 aa)
	PRUNE2	Prune homolog 2 with BCH domain. (3054 aa)
	ATCAY	ATCAY kinesin light chain interacting caytaxin. (371 aa)
	TTPAL	Alpha tocopherol transfer protein like. (341 aa)
	TTPA	Alpha tocopherol transfer protein. (280 aa)
	KALRN	Kalirin RhoGEF kinase. (2985 aa)
	SEC14L3	SEC14 like lipid binding 3. (400 aa)
	CLVS2	Clavesin 2. (327 aa)
	ARHGAP1	Rho GTPase activating protein 1. (462 aa)
	TRIO	Trio Rho guanine nucleotide exchange factor. (3051 aa)
	SEC14L2	Uncharacterized protein. (403 aa)
	SEC14L4	SEC14 like lipid binding 4. (401 aa)

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP1	ARHGAP8	ENSOGAP00000012805	ENSOGAP00000009391	Rho GTPase activating protein 1.	Uncharacterized protein.	0.587
ARHGAP1	ATCAY	ENSOGAP00000012805	ENSOGAP00000015368	Rho GTPase activating protein 1.	ATCAY kinesin light chain interacting caytaxin.	0.827
ARHGAP1	BNIP2	ENSOGAP00000012805	ENSOGAP00000006326	Rho GTPase activating protein 1.	BCL2 interacting protein 2.	0.871
ARHGAP1	BNIPL	ENSOGAP00000012805	ENSOGAP00000009257	Rho GTPase activating protein 1.	BCL2 interacting protein like.	0.475
ARHGAP8	ARHGAP1	ENSOGAP00000009391	ENSOGAP00000012805	Uncharacterized protein.	Rho GTPase activating protein 1.	0.587
ATCAY	ARHGAP1	ENSOGAP00000015368	ENSOGAP00000012805	ATCAY kinesin light chain interacting caytaxin.	Rho GTPase activating protein 1.	0.827
BNIP2	ARHGAP1	ENSOGAP00000006326	ENSOGAP00000012805	BCL2 interacting protein 2.	Rho GTPase activating protein 1.	0.871
BNIPL	ARHGAP1	ENSOGAP00000009257	ENSOGAP00000012805	BCL2 interacting protein like.	Rho GTPase activating protein 1.	0.475
PTPN9	SEC14L1	ENSOGAP00000000138	ENSOGAP00000002131	Protein tyrosine phosphatase non-receptor type 9.	SEC14 like lipid binding 1.	0.519
SEC14L1	PTPN9	ENSOGAP00000002131	ENSOGAP00000000138	SEC14 like lipid binding 1.	Protein tyrosine phosphatase non-receptor type 9.	0.519
SEC14L1	SESTD1	ENSOGAP00000002131	ENSOGAP00000009944	SEC14 like lipid binding 1.	SEC14 and spectrin domain containing 1.	0.538
SESTD1	SEC14L1	ENSOGAP00000009944	ENSOGAP00000002131	SEC14 and spectrin domain containing 1.	SEC14 like lipid binding 1.	0.538