23 items (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MCF2L	MCF.2 cell line derived transforming sequence like. (1179 aa)
	MACF1	Microtubule actin crosslinking factor 1. (7345 aa)
	UTRN	Utrophin. (3397 aa)
	SPTA1	Spectrin alpha, erythrocytic 1. (2412 aa)
	DRP2	Dystrophin related protein 2. (882 aa)
	ACTN2	Actinin alpha 2. (894 aa)
	AKAP6	A-kinase anchoring protein 6. (2316 aa)
	ACTN3	Actinin alpha 3 (gene/pseudogene). (899 aa)
	SPTB	Spectrin beta chain; Belongs to the spectrin family. (2333 aa)
	SPTAN1	Spectrin alpha, non-erythrocytic 1. (2465 aa)
	SPTBN1	Spectrin beta chain; Belongs to the spectrin family. (2395 aa)
	H0WX49_OTOGA	KASH domain-containing protein. (2149 aa)
	ACTN1	Actinin alpha 1. (867 aa)
	SYNE3	Spectrin repeat containing nuclear envelope family member 3. (975 aa)
	DMD	Dystrophin. (3682 aa)
	ACTN4	Actinin alpha 4. (880 aa)
	SYNE1	Spectrin repeat containing nuclear envelope protein 1. (8779 aa)
	DST	Dystonin. (5410 aa)
	TRIO	Trio Rho guanine nucleotide exchange factor. (3051 aa)
	KALRN	Kalirin RhoGEF kinase. (2985 aa)
	SPTBN2	Spectrin beta chain; Belongs to the spectrin family. (2389 aa)
	SPTBN5	Spectrin beta, non-erythrocytic 5. (3653 aa)
	SPTBN4	Spectrin beta, non-erythrocytic 4. (2567 aa)

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN1	ACTN2	ENSOGAP00000009062	ENSOGAP00000000654	Actinin alpha 1.	Actinin alpha 2.	0.616
ACTN1	ACTN3	ENSOGAP00000009062	ENSOGAP00000002437	Actinin alpha 1.	Actinin alpha 3 (gene/pseudogene).	0.461
ACTN1	ACTN4	ENSOGAP00000009062	ENSOGAP00000011198	Actinin alpha 1.	Actinin alpha 4.	0.989
ACTN1	DMD	ENSOGAP00000009062	ENSOGAP00000010229	Actinin alpha 1.	Dystrophin.	0.501
ACTN1	DRP2	ENSOGAP00000009062	ENSOGAP00000000257	Actinin alpha 1.	Dystrophin related protein 2.	0.501
ACTN1	UTRN	ENSOGAP00000009062	ENSOGAP00000000122	Actinin alpha 1.	Utrophin.	0.501
ACTN2	ACTN1	ENSOGAP00000000654	ENSOGAP00000009062	Actinin alpha 2.	Actinin alpha 1.	0.616
ACTN2	ACTN3	ENSOGAP00000000654	ENSOGAP00000002437	Actinin alpha 2.	Actinin alpha 3 (gene/pseudogene).	0.880
ACTN2	ACTN4	ENSOGAP00000000654	ENSOGAP00000011198	Actinin alpha 2.	Actinin alpha 4.	0.623
ACTN2	DMD	ENSOGAP00000000654	ENSOGAP00000010229	Actinin alpha 2.	Dystrophin.	0.553
ACTN2	DRP2	ENSOGAP00000000654	ENSOGAP00000000257	Actinin alpha 2.	Dystrophin related protein 2.	0.501
ACTN2	UTRN	ENSOGAP00000000654	ENSOGAP00000000122	Actinin alpha 2.	Utrophin.	0.522
ACTN3	ACTN1	ENSOGAP00000002437	ENSOGAP00000009062	Actinin alpha 3 (gene/pseudogene).	Actinin alpha 1.	0.461
ACTN3	ACTN2	ENSOGAP00000002437	ENSOGAP00000000654	Actinin alpha 3 (gene/pseudogene).	Actinin alpha 2.	0.880
ACTN3	ACTN4	ENSOGAP00000002437	ENSOGAP00000011198	Actinin alpha 3 (gene/pseudogene).	Actinin alpha 4.	0.461
ACTN3	DMD	ENSOGAP00000002437	ENSOGAP00000010229	Actinin alpha 3 (gene/pseudogene).	Dystrophin.	0.548
ACTN3	DRP2	ENSOGAP00000002437	ENSOGAP00000000257	Actinin alpha 3 (gene/pseudogene).	Dystrophin related protein 2.	0.501
ACTN3	UTRN	ENSOGAP00000002437	ENSOGAP00000000122	Actinin alpha 3 (gene/pseudogene).	Utrophin.	0.521
ACTN4	ACTN1	ENSOGAP00000011198	ENSOGAP00000009062	Actinin alpha 4.	Actinin alpha 1.	0.989
ACTN4	ACTN2	ENSOGAP00000011198	ENSOGAP00000000654	Actinin alpha 4.	Actinin alpha 2.	0.623