STRINGSTRING
H0WFU3_OTOGA H0WFU3_OTOGA ATXN2 ATXN2 H0WKU8_OTOGA H0WKU8_OTOGA LSM10 LSM10 LSM14B LSM14B SNRPE SNRPE SNRPN SNRPN LSM3 LSM3 SNRPD1 SNRPD1 LSM11 LSM11 GEMIN6 GEMIN6 LSM12 LSM12 ATXN2L ATXN2L LSM8 LSM8 LSM5 LSM5 H0XAZ5_OTOGA H0XAZ5_OTOGA EDC3 EDC3 GEMIN7 GEMIN7 LSM1 LSM1 SNRPG SNRPG SNRPD3 SNRPD3 SNRPB SNRPB LSM4 LSM4 LSM6 LSM6 SNRPD2 SNRPD2 LSM3-3 LSM3-3 NAA38 NAA38 LSM3-2 LSM3-2 LOC100957263 LOC100957263 H0XSL2_OTOGA H0XSL2_OTOGA H0XUK6_OTOGA H0XUK6_OTOGA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
H0WFU3_OTOGASm domain-containing protein. (102 aa)
ATXN2Ataxin 2. (1291 aa)
H0WKU8_OTOGAUncharacterized protein. (466 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
LSM14BLSM family member 14B. (424 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (76 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
LSM11LSM11, U7 small nuclear RNA associated. (211 aa)
GEMIN6Gem nuclear organelle associated protein 6. (167 aa)
LSM12LSM12 homolog. (195 aa)
ATXN2LAtaxin 2 like. (1100 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
H0XAZ5_OTOGASm domain-containing protein. (53 aa)
EDC3Enhancer of mRNA decapping 3. (508 aa)
GEMIN7Gem nuclear organelle associated protein 7. (131 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (73 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (148 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
LSM6Sm domain-containing protein. (80 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
LSM3-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
NAA38N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (176 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LOC100957263Sm domain-containing protein. (86 aa)
H0XSL2_OTOGASm domain-containing protein. (102 aa)
H0XUK6_OTOGAUncharacterized protein. (431 aa)
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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