STRINGSTRING
CSTF1 CSTF1 CSTF2T CSTF2T LOC100957263 LOC100957263 H0XSR3_OTOGA H0XSR3_OTOGA H0XUE9_OTOGA H0XUE9_OTOGA SNRPD3 SNRPD3 H0XW28_OTOGA H0XW28_OTOGA H0XW89_OTOGA H0XW89_OTOGA CASC3 CASC3 H0XWH7_OTOGA H0XWH7_OTOGA LOC100953940 LOC100953940 SRSF1 SRSF1 H0XZ23_OTOGA H0XZ23_OTOGA H0XZ25_OTOGA H0XZ25_OTOGA THOC7 THOC7 H0Y0R1_OTOGA H0Y0R1_OTOGA H0Y1C6_OTOGA H0Y1C6_OTOGA H0Y1N2_OTOGA H0Y1N2_OTOGA CPSF7 CPSF7 H0Y2H0_OTOGA H0Y2H0_OTOGA WDR25 WDR25 RBM8A RBM8A ZC3H11A ZC3H11A THOC2 THOC2 CPSF1 CPSF1 THOC1 THOC1 SRSF3 SRSF3 CPSF3 CPSF3 SARNP SARNP PCF11 PCF11 LSM10 LSM10 PAPOLG PAPOLG SRSF11 SRSF11 THOC3 THOC3 TPRG1 TPRG1 SRSF9 SRSF9 SNRPE SNRPE CLP1 CLP1 PAPOLA PAPOLA UPF3B UPF3B NCBP2 NCBP2 C12orf50 C12orf50 U2AF2 U2AF2 EIF4A3 EIF4A3 POLDIP3 POLDIP3 THOC6 THOC6 H0WYU1_OTOGA H0WYU1_OTOGA CDC40 CDC40 DHX38 DHX38 PABPN1 PABPN1 LSM11 LSM11 FIP1L1 FIP1L1 SLBP SLBP SRSF7 SRSF7 SRRM1 SRRM1 CSTF3 CSTF3 DDX39A DDX39A CHTOP CHTOP CPSF4 CPSF4 CSTF2 CSTF2 FYTTD1 FYTTD1 ZC3H13 ZC3H13 SLU7 SLU7 ALYREF ALYREF MAGOH MAGOH SYMPK SYMPK NCBP1 NCBP1 H0XAZ5_OTOGA H0XAZ5_OTOGA SRSF6 SRSF6 WDR33 WDR33 NUDT21 NUDT21 SRSF5 SRSF5 SNRPG SNRPG SRSF4 SRSF4 SNRPB SNRPB ZNF318 ZNF318 SREK1 SREK1 H0XFH8_OTOGA H0XFH8_OTOGA THOC5 THOC5 H0XIU2_OTOGA H0XIU2_OTOGA CPSF6 CPSF6 ZNF473 ZNF473 H0XKC6_OTOGA H0XKC6_OTOGA PAPOLB PAPOLB TPRG1L TPRG1L H0XMB9_OTOGA H0XMB9_OTOGA H0XNJ3_OTOGA H0XNJ3_OTOGA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (601 aa)
LOC100957263Sm domain-containing protein. (86 aa)
H0XSR3_OTOGAUncharacterized protein. (429 aa)
H0XUE9_OTOGAUncharacterized protein. (148 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (148 aa)
H0XW28_OTOGARRM domain-containing protein. (148 aa)
H0XW89_OTOGAUncharacterized protein. (360 aa)
CASC3CASC3 exon junction complex subunit. (712 aa)
H0XWH7_OTOGASmg4_UPF3 domain-containing protein. (460 aa)
LOC100953940Uncharacterized protein. (231 aa)
SRSF1Uncharacterized protein. (256 aa)
H0XZ23_OTOGAUncharacterized protein. (235 aa)
H0XZ25_OTOGACleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (211 aa)
THOC7THO complex 7. (204 aa)
H0Y0R1_OTOGAUncharacterized protein. (420 aa)
H0Y1C6_OTOGAUncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
H0Y1N2_OTOGARRM domain-containing protein. (325 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (506 aa)
H0Y2H0_OTOGARRM domain-containing protein. (132 aa)
WDR25WD repeat domain 25. (534 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (177 aa)
ZC3H11AUncharacterized protein. (816 aa)
THOC2THO complex 2. (1593 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1442 aa)
THOC1THO complex 1. (655 aa)
SRSF3Serine and arginine rich splicing factor 3. (164 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (681 aa)
SARNPSAP domain containing ribonucleoprotein. (167 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1644 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
PAPOLGPoly(A) polymerase gamma. (408 aa)
SRSF11Serine and arginine rich splicing factor 11. (481 aa)
THOC3THO complex 3. (351 aa)
TPRG1Tumor protein p63 regulated 1. (279 aa)
SRSF9Serine and arginine rich splicing factor 9. (222 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (76 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (740 aa)
UPF3BSmg4_UPF3 domain-containing protein. (470 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
C12orf50Chromosome 12 open reading frame 50. (416 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
EIF4A3Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
POLDIP3DNA polymerase delta interacting protein 3. (421 aa)
THOC6THO complex 6. (341 aa)
H0WYU1_OTOGACleavage and polyadenylation specificity factor subunit 2. (333 aa)
CDC40Cell division cycle 40. (579 aa)
DHX38DEAH-box helicase 38. (1229 aa)
PABPN1RRM domain-containing protein. (306 aa)
LSM11LSM11, U7 small nuclear RNA associated. (211 aa)
FIP1L1Factor interacting with PAPOLA and CPSF1. (595 aa)
SLBPStem-loop binding protein. (270 aa)
SRSF7Serine and arginine rich splicing factor 7. (242 aa)
SRRM1Serine and arginine repetitive matrix 1. (916 aa)
CSTF3Cleavage stimulation factor subunit 3. (720 aa)
DDX39AUncharacterized protein. (427 aa)
CHTOPChromatin target of PRMT1. (142 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
CSTF2Cleavage stimulation factor subunit 2. (628 aa)
FYTTD1Forty-two-three domain containing 1. (323 aa)
ZC3H13Zinc finger CCCH-type containing 13. (1653 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
ALYREFAly/REF export factor. (233 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
SYMPKSymplekin. (1274 aa)
NCBP1Nuclear cap binding protein subunit 1. (792 aa)
H0XAZ5_OTOGASm domain-containing protein. (53 aa)
SRSF6Serine and arginine rich splicing factor 6. (345 aa)
WDR33WD repeat domain 33. (1336 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
SRSF5Serine and arginine rich splicing factor 5. (270 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (73 aa)
SRSF4Serine and arginine rich splicing factor 4. (493 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
ZNF318Zinc finger protein 318. (2250 aa)
SREK1Splicing regulatory glutamic acid and lysine rich protein 1. (501 aa)
H0XFH8_OTOGAUncharacterized protein. (225 aa)
THOC5THO complex 5. (700 aa)
H0XIU2_OTOGACleavage and polyadenylation specificity factor subunit 2. (295 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (522 aa)
ZNF473Zinc finger protein 473. (734 aa)
H0XKC6_OTOGAUncharacterized protein. (427 aa)
PAPOLBPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (705 aa)
TPRG1LTumor protein p63 regulated 1 like. (272 aa)
H0XMB9_OTOGARRM domain-containing protein. (416 aa)
H0XNJ3_OTOGARRM domain-containing protein. (166 aa)
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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