STRINGSTRING
Cla_0087 Cla_0087 Cla_0141 Cla_0141 Cla_0544 Cla_0544 cheB cheB cheR cheR Cla_1204 Cla_1204 cheY cheY cheW cheW cheA cheA cheV cheV Cla_1499 Cla_1499
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cla_0087MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (600 aa)
Cla_0141MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (658 aa)
Cla_0544MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (530 aa)
cheBProtein-glutamate methylesterase; Pfam match to PF01339.8 CheB_methylest. (183 aa)
cheRChemotaxis protein methyltransferase; Pfam match to PF01739.9 CheR. (260 aa)
Cla_1204MCP-domain signal transduction protein; Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3. (431 aa)
cheYChemotaxis protein CheY; Pfam match to PF00072.15 Response_reg. (125 aa)
cheWChemotaxis protein CheW; Pfam match to PF01584.10 CheW. (172 aa)
cheAChemotaxis protein CheA; Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim. (770 aa)
cheVChemotaxis protein CheV; Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg. (317 aa)
Cla_1499MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (694 aa)
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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