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| | dccS | Two-component sensor histidine kinase; Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c. (407 aa) |
| | Cla_1100 | Conserved hypothetical protein (DUF152 domain protein); Pfam match to PF02578.6 DUF152; Belongs to the multicopper oxidase YfiH/RL5 family. (226 aa) |
| | Cla_1080 | Conserved hypothetical protein, putative multidrug resistance efflux protein; Pfam match to PF00893.10 Multi_Drug_Res. (113 aa) |
| | Cla_1079 | Conserved hypothetical protein, putative multidrug resistance efflux protein; Pfam match to PF00893.10 Multi_Drug_Res. (104 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (979 aa) |
| | magIII | HhH-GPD family protein; Pfam match to PF00730.16 HhH-GPD. (226 aa) |
| | Cla_1032 | MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (375 aa) |
| | napL | Periplasmic protein NapL. (308 aa) |
| | ogt | methylated-DNA--protein-cysteine methyltransferase; Pfam match to PF01035.11 DNA_binding_1. (150 aa) |
| | cetA | MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (458 aa) |
| | lon | DNA-binding, ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (792 aa) |
| | Cla_0922 | Conserved hypothetical protein, putative pyridine nucleotide-disulphide oxidoreductase; Pfam match to PF00070.18 Pyr_redox. (314 aa) |
| | rdxA | Nitroreductase; Pfam match to PF00881.15 Nitroreductase. (202 aa) |
| | macB | ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (643 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (208 aa) |
| | Cla_0907 | Conserved hypothetical protein (MOSC domain protein); Pfam match to PF03473.8 MOSC. (218 aa) |
| | thiJ | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein; Pfam match to PF01965.15 DJ-1_PfpI. (188 aa) |
| | Cla_0889 | Conserved hypothetical protein (DUF262 domain protein); Pfam match to PF03235.5 DUF262. (451 aa) |
| | Cla_0888 | Conserved hypothetical protein (DUF262 domain protein); Pfam match to PF03235.5 DUF262. (709 aa) |
| | mcrC | Conserved hypothetical protein. (459 aa) |
| | oorA | 2-oxoglutarate:acceptor oxidoreductase, OorA subunit; Pfam match to PF01855.10 POR_N. (374 aa) |
| | phosS | Two-component sensor histidine kinase; Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c. (429 aa) |
| | phosR | Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (219 aa) |
| | msrA | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (168 aa) |
| | tpx | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (174 aa) |
| | cprS | Two-component sensor histidine kinase; Pfam matches to PF00672.16 HAMP, and to PF00512.16 HisKA. (414 aa) |
| | cprR | Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (224 aa) |
| | Cla_0753 | S4 RNA-binding domain protein; Pfam match to PF01479.16 S4. (82 aa) |
| | recG | ATP-dependent DNA helicase; Pfam matches to PF00270.20 DEAD, and to PF00271.22 Helicase_C. (607 aa) |
| | cheR | Chemotaxis protein methyltransferase; Pfam match to PF01739.9 CheR. (260 aa) |
| | cheB | Protein-glutamate methylesterase; Pfam match to PF01339.8 CheB_methylest. (183 aa) |
| | ychF | Conserved hypothetical protein, predicted GTP-binding protein (DUF933 domain protein); ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa) |
| | ligA | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (651 aa) |
| | cbrR | Two component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00990.12 GGDEF. (414 aa) |
| | Cla_0340 | Putative modulator of drug activity MdaB; Pfam match to PF02525.8 Flavodoxin_2. (193 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (504 aa) |
| | ruvA | Holliday junction DNA helicase, DNA-binding subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (183 aa) |
| | flgS | Two-component sensor histidine kinase; Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c. (338 aa) |
| | Cla_0590 | DnaJ domain protein; Pfam match to PF00226.22 DnaJ. (268 aa) |
| | Cla_0558 | Type II restriction-modification enzyme. (1186 aa) |
| | Cla_0546 | DnaJ-like protein; Pfam match to PF00226.22 DnaJ. (256 aa) |
| | Cla_0544 | MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (530 aa) |
| | Cla_0543 | Conserved hypothetical META domain lipoprotein; Pfam match to PF03724.7 META. (137 aa) |
| | flgR | Sigma-54 dependent DNA-binding response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00158.17 Sigma54_activat. (429 aa) |
| | Cla_0522 | Conserved hypothetical protein, possible helicase. (420 aa) |
| | Cla_0507 | Conserved hypothetical protein. (218 aa) |
| | lptD | Conserved hypothetical protein, putative organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (677 aa) |
| | Cla_0503 | Conserved hypothetical protein. (479 aa) |
| | uvrC | Excinuclease ABC, subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (597 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (190 aa) |
| | racS | Two-component sensor histidine kinase; Pfam match to PF02518.17 HATPase_c. (410 aa) |
| | racR | Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (223 aa) |
| | dnaJ | Co-chaperone and heat shock protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions be [...] (373 aa) |
| | Cla_0435 | Conserved hypothetical protein (DUF328 domain protein); Pfam match to PF03883.5 DUF328; Belongs to the UPF0246 family. (246 aa) |
| | Cla_0395 | Conserved hypothetical protein; Pfam match to PF09674.1 CHP02757. (249 aa) |
| | Cla_0394 | Conserved hypothetical integral membrane protein (DUF81 domain protein); Pfam match to PF01925.10 DUF81. (250 aa) |
| | Cla_0383 | MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00672.16 HAMP. (656 aa) |
| | Cla_0369 | Conserved hypothetical protein. (139 aa) |
| | hsdS | Type I restriction-modification system, S subunit; Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S. (390 aa) |
| | hsdR | Type I restriction-modification system, R subunit; Pfam matches to PF04313.5 HSDR_N, and to PF04851.6 ResIII. (770 aa) |
| | Cla_0342 | Putative Blc-like protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (150 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (158 aa) |
| | rarA | ATPase, AAA family protein; Pfam match to PF00004.20 AAA. (396 aa) |
| | Cla_1551 | Conserved hypothetical protein (DUF520 domain protein); Pfam match to PF04461.4 DUF520; Belongs to the UPF0234 family. (163 aa) |
| | Cla_1547 | MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (657 aa) |
| | Cla_1546 | MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00015.12 MCPsignal. (660 aa) |
| | cgb | Conserved hypothetical protein, putative flavohemoprotein; Pfam match to PF00042.13 Globin; Belongs to the globin family. (142 aa) |
| | Cla_1522 | Conserved hypothetical protein. (408 aa) |
| | Cla_1499 | MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (694 aa) |
| | Cla_1471 | Integral membrane protein, TerC family; Pfam match to PF03741.7 TerC. (240 aa) |
| | recJ | single-stranded-DNA specific exonuclease; Pfam matches to PF01368.11 DHH, and to PF02272.10 DHHA1. (523 aa) |
| | uppP | Undecaprenol kinase, putative; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (268 aa) |
| | lig | Pfam match to PF01068.12 DNA_ligase_A_M. (312 aa) |
| | xth | Exodeoxyribonuclease III; Pfam match to PF03372.14 Exo_endo_phos. (252 aa) |
| | sodB | Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (217 aa) |
| | rbr | Rubrerythrin; Pfam matches to PF06397.3 Desulfoferrod_N, and to PF02915.8 Rubrerythrin. (215 aa) |
| | mug | Conserved hypothetical protein. (157 aa) |
| | Cla_0087 | MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (600 aa) |
| | Cla_0088 | Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG. (306 aa) |
| | Cla_0100 | Conserved hypothetical protein. (243 aa) |
| | Cla_0105 | MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (381 aa) |
| | Cla_0109 | Conserved hypothetical protein, putative drug resistance transporter, Bcr/CflA family; Pfam match to PF07690.7 MFS_1. (413 aa) |
| | Cla_0113 | Conserved hypothetical protein (DUF149 domain protein); Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (101 aa) |
| | sodC | Superoxide dismutase (Cu/Zn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (179 aa) |
| | ung | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (229 aa) |
| | Cla_0127 | Two-component sensor histidine kinase; Pfam match to PF02518.17 HATPase_c. (435 aa) |
| | Cla_0128 | Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (228 aa) |
| | Cla_0130 | Conserved hypothetical protein. (250 aa) |
| | mutY | A/G-specific adenine glycosylase; Pfam match to PF00730.16 HhH-GPD. (342 aa) |
| | Cla_0141 | MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (658 aa) |
| | Cla_0144 | Conserved hypothetical protein; Belongs to the UPF0250 family. (87 aa) |
| | recA | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (344 aa) |
| | Cla_0170 | Conserved hypothetical protein. (140 aa) |
| | fliN | Flagellar motor switch protein FliN; Pfam match to PF01052.11 SpoA. (98 aa) |
| | cosR | Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (224 aa) |
| | ccpA | Cytochrome c551 peroxidase; Pfam match to PF03150.5 CCP_MauG. (344 aa) |
| | Cla_0208 | Conserved hypothetical protein. (204 aa) |
| | Cla_0225 | Conserved hypothetical protein, putative endonuclease. (208 aa) |
| | fliM | Flagellar motor switch protein FliM; Pfam match to PF02154.6 FliM. (363 aa) |
| | fliY | Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA. (279 aa) |
| | Cla_0244 | Conserved hypothetical protein, putative two-component response regulator; Pfam match to PF00072.15 Response_reg. (291 aa) |
| | Cla_0248 | Conserved hypothetical protein, putative bacterioferritin; Pfam match to PF00210.15 Ferritin; Belongs to the Dps family. (149 aa) |
| | uspA | UspA-related nucleotide-binding protein; Pfam match to PF00582.17 Usp. (278 aa) |
| | fliL | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (183 aa) |
| | katA | Catalase; Pfam match to PF00199.10 Catalase. (474 aa) |
| | trxB | Thioredoxin reductase; Pfam match to PF07992.5 Pyr_redox_2. (313 aa) |
| | bcp | Bacterioferritin comigratory protein (AhpC/Tsa family); Pfam match to PF00578.12 AhpC-TSA. (153 aa) |
| | Cla_1392 | Putative multidrug resistance protein, SMR family; Pfam match to PF00893.10 Multi_Drug_Res. (115 aa) |
| | Cla_1391 | Putative multidrug resistance protein, SMR family; Pfam match to PF00893.10 Multi_Drug_Res. (104 aa) |
| | Cla_1388 | Conserved hypothetical protein, tetratricopeptide repeat domain protein family; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives. (184 aa) |
| | Cla_1383 | Conserved hypothetical protein, possible beta-lactamase; Pfam match to PF00905.13 Transpeptidase. (248 aa) |
| | cheV | Chemotaxis protein CheV; Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg. (317 aa) |
| | cheA | Chemotaxis protein CheA; Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim. (770 aa) |
| | cheW | Chemotaxis protein CheW; Pfam match to PF01584.10 CheW. (172 aa) |
| | fliG | Flagellar motor switch protein FliG; Pfam match to PF01706.7 FliG_C. (342 aa) |
| | Cla_1349 | Conserved hypothetical protein (DUF466 domain protein); Pfam match to PF04328.4 DUF466. (63 aa) |
| | cstA | Carbon starvation protein A; Pfam match to PF02554.5 CstA. (701 aa) |
| | uvrA | Excinuclease ABC, subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (941 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (879 aa) |
| | motB | Flagellar motor component MotB; Pfam match to PF00691.11 OmpA. (244 aa) |
| | ahpC | Alkyl hydroperoxide reductase C22 protein, AhpC/TsaA family; Pfam match to PF00578.12 AhpC-TSA. (198 aa) |
| | Cla_1331 | MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (678 aa) |
| | Cla_1310 | Conserved hypothetical protein. (164 aa) |
| | Cla_1309 | Conserved hypothetical protein. (110 aa) |
| | Cla_1304 | Conserved hypothetical protein, putative HAD superfamily hydrolase. (507 aa) |
| | Cla_1301 | Conserved hypothetical protein. (260 aa) |
| | Cla_1288 | Conserved hypothetical protein. (237 aa) |
| | ruvB | Holliday junction DNA helicase, ATPase motor protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (336 aa) |
| | Cla_1274 | Conserved hypothetical protein. (136 aa) |
| | dinP | UV damage repair protein, ImpB/MucB/SamB family; Pfam match to PF00817.11 IMS. (488 aa) |
| | cheY | Chemotaxis protein CheY; Pfam match to PF00072.15 Response_reg. (125 aa) |
| | tpx2 | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (172 aa) |
| | Cla_1216 | Conserved hypothetical protein, putative ComEC/Rec2-related protein domain protein; Pfam match to PF03772.7 Competence. (418 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (446 aa) |
| | Cla_1204 | MCP-domain signal transduction protein; Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3. (431 aa) |
| | uvrB | Excinuclease ABC, subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (657 aa) |
| | Cla_1164 | Conserved hypothetical protein, possible lipoprotein thioredoxin; Pfam match to PF08534.1 Redoxin. (163 aa) |
| | mutS | Mismatch repair ATPase MutS, MutS2 family; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (731 aa) |
| | Cla_1136 | Conserved hypothetical protein (DUF461 domain protein); Pfam match to PF04314.4 DUF461. (139 aa) |
| | dccR | Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (221 aa) |
