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dnaA dnaA Cla_0087 Cla_0087 Cla_0128 Cla_0128 Cla_0141 Cla_0141 flaA flaA flaB flaB fliA fliA frdC frdC frdA frdA frdB frdB ccoN ccoN ccoO ccoO ccoQ ccoQ ccoP ccoP Cla_0383 Cla_0383 Cla_0426 Cla_0426 cccA cccA Cla_0544 Cla_0544 flaC flaC cheB cheB cheR cheR hyaC hyaC rpoN rpoN htrA htrA pstS pstS cmeD cmeD glnA glnA csrA csrA petC petC petB petB petA petA Cla_1125 Cla_1125 Cla_1204 Cla_1204 cheY cheY Cla_1311 Cla_1311 Cla_1331 Cla_1331 motA motA cheW cheW cheA cheA cheV cheV Cla_1499 Cla_1499 Cla_1546 Cla_1546 Cla_1547 Cla_1547
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (442 aa)
Cla_0087MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (600 aa)
Cla_0128Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C. (228 aa)
Cla_0141MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (658 aa)
flaAFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (569 aa)
flaBFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (569 aa)
fliAFlagellar biosynthesis sigma factor, sigma-F; Pfam matches to PF04542.5 Sigma70_r2, and to PF04545.7 Sigma70_r4; Belongs to the sigma-70 factor family. (228 aa)
frdCFumarate reductase, cytochrome b subunit; Pfam match to PF02967.5 Fum_red_TM. (259 aa)
frdAFumarate reductase, flavoprotein subunit; Pfam matches to PF00890.15 FAD_binding_2, and to PF02910.11 Succ_DH_flav_C. (668 aa)
frdBFumarate reductase, iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (241 aa)
ccoNCytochrome c oxidase, cbb3-type, subunit I; Pfam match to PF00115.11 COX1; Belongs to the heme-copper respiratory oxidase family. (488 aa)
ccoOCytochrome c oxidase, cbb3-type, subunit II; Pfam match to PF02433.6 FixO. (221 aa)
ccoQCytochrome c oxidase, cbb3-type, subunit IV; Pfam match to PF09672.1 Cbb3_Q_epsi. (67 aa)
ccoPCytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (292 aa)
Cla_0383MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00672.16 HAMP. (656 aa)
Cla_0426Nucleotidyltransferase, GlnD family. (797 aa)
cccACytochrome c family protein; Pfam match to PF00034.12 Cytochrom_C. (101 aa)
Cla_0544MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (530 aa)
flaCFlagellin; Pfam match to PF00669.11 Flagellin_N. (249 aa)
cheBProtein-glutamate methylesterase; Pfam match to PF01339.8 CheB_methylest. (183 aa)
cheRChemotaxis protein methyltransferase; Pfam match to PF01739.9 CheR. (260 aa)
hyaCNi/Fe hydrogenase, cytochrome b subunit; Pfam match to PF01292.11 Ni_hydr_CYTB. (230 aa)
rpoNRNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (415 aa)
htrAPeriplasmic serine protease DO; Pfam match to PF00089.17 Trypsin; Belongs to the peptidase S1C family. (472 aa)
pstSPhosphate ABC transporter, periplasmic phosphate-binding protein. (327 aa)
cmeDOuter membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP. (418 aa)
glnAGlutamine synthetase; Pfam matches to PF03951.10 Gln-synt_N, and to PF00120.15 Gln-synt_C; Belongs to the glutamine synthetase family. (476 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (75 aa)
petCUbiquinol cytochrome c oxidoreductase, cytochrome c1 subunit. (375 aa)
petBUbiquinol cytochrome c oxidoreductase, cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (414 aa)
petAUbiquinol cytochrome c oxidoreductase, 2Fe-2S subunit; Pfam match to PF00355.17 Rieske. (167 aa)
Cla_1125Low molecular weight phosphotyrosine protein phosphatase; Pfam match to PF01451.12 LMWPc; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (154 aa)
Cla_1204MCP-domain signal transduction protein; Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3. (431 aa)
cheYChemotaxis protein CheY; Pfam match to PF00072.15 Response_reg. (125 aa)
Cla_1311Conserved hypothetical protein, putative amino acid adenylation domain protein; Pfam match to PF00501.19 AMP-binding. (498 aa)
Cla_1331MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (678 aa)
motAFlagellar motor component MotA; Pfam match to PF01618.7 MotA_ExbB. (257 aa)
cheWChemotaxis protein CheW; Pfam match to PF01584.10 CheW. (172 aa)
cheAChemotaxis protein CheA; Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim. (770 aa)
cheVChemotaxis protein CheV; Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg. (317 aa)
Cla_1499MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal. (694 aa)
Cla_1546MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00015.12 MCPsignal. (660 aa)
Cla_1547MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal. (657 aa)
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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