(33 nodes) Porphyrin and chlorophyll metabolism network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TJ21_VOLCA	Uncharacterized protein. (344 aa)
	D8TJ31_VOLCA	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (391 aa)
	D8TKE8_VOLCA	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (414 aa)
	cpx1	Coproporphyrinogen III oxidase chloroplast. (396 aa)
	D8TMM9_VOLCA	Uncharacterized protein. (3038 aa)
	chlM	Magnesium protoporphyrin IX S-adenosyl methionine O-methyl transferase chloroplast. (335 aa)
	D8TNS6_VOLCA	AB hydrolase-1 domain-containing protein. (373 aa)
	D8TNW3_VOLCA	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (414 aa)
	D8TP77_VOLCA	Copper target 1 protein. (407 aa)
	D8TP88_VOLCA	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (394 aa)
	urod1	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (390 aa)
	D8TS41_VOLCA	Uncharacterized protein. (380 aa)
	D8TUG4_VOLCA	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (464 aa)
	D8TVM5_VOLCA	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (397 aa)
	D8TWH5_VOLCA	Uncharacterized protein. (355 aa)
	D8TYV2_VOLCA	Methyltransf_25 domain-containing protein. (297 aa)
	D8TZA1_VOLCA	Copper response defect 1 protein. (415 aa)
	D8TZE5_VOLCA	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (494 aa)
	D8TZH2_VOLCA	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family. (522 aa)
	D8U1W1_VOLCA	TP_methylase domain-containing protein. (410 aa)
	D8U1Y7_VOLCA	Uncharacterized protein. (496 aa)
	D8U5E6_VOLCA	NAD(P)-bd_dom domain-containing protein. (415 aa)
	D8U5H3_VOLCA	Chlorophyll a oxygenase. (657 aa)
	D8U8H2_VOLCA	DUF3479 domain-containing protein. (2066 aa)
	upf3	Magnesium protoporphyrin chelatase. (1398 aa)
	D8U992_VOLCA	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (565 aa)
	chlD	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (702 aa)
	D8UBW6_VOLCA	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (736 aa)
	urod2	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (395 aa)
	D8UCZ7_VOLCA	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (303 aa)
	D8UD86_VOLCA	Porphobil_deam domain-containing protein. (206 aa)
	D8UHM8_VOLCA	FAD_binding_3 domain-containing protein. (508 aa)
	D8UIG8_VOLCA	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (262 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TJ21_VOLCA	D8TJ31_VOLCA	D8TJ21	D8TJ31	Uncharacterized protein.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.564
D8TJ21_VOLCA	D8TNW3_VOLCA	D8TJ21	D8TNW3	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.654
D8TJ21_VOLCA	D8TUG4_VOLCA	D8TJ21	D8TUG4	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.424
D8TJ21_VOLCA	D8TVM5_VOLCA	D8TJ21	D8TVM5	Uncharacterized protein.	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	0.555
D8TJ21_VOLCA	D8TWH5_VOLCA	D8TJ21	D8TWH5	Uncharacterized protein.	Uncharacterized protein.	0.458
D8TJ21_VOLCA	D8TZE5_VOLCA	D8TJ21	D8TZE5	Uncharacterized protein.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.525
D8TJ21_VOLCA	D8TZH2_VOLCA	D8TJ21	D8TZH2	Uncharacterized protein.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.536
D8TJ21_VOLCA	D8U992_VOLCA	D8TJ21	D8U992	Uncharacterized protein.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.983
D8TJ21_VOLCA	D8UD86_VOLCA	D8TJ21	D8UD86	Uncharacterized protein.	Porphobil_deam domain-containing protein.	0.458
D8TJ21_VOLCA	D8UHM8_VOLCA	D8TJ21	D8UHM8	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.431
D8TJ21_VOLCA	D8UIG8_VOLCA	D8TJ21	D8UIG8	Uncharacterized protein.	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.658
D8TJ21_VOLCA	cpx1	D8TJ21	D8TM08	Uncharacterized protein.	Coproporphyrinogen III oxidase chloroplast.	0.907
D8TJ21_VOLCA	urod1	D8TJ21	D8TRK3	Uncharacterized protein.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.983
D8TJ21_VOLCA	urod2	D8TJ21	D8UC43	Uncharacterized protein.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.969
D8TJ31_VOLCA	D8TJ21_VOLCA	D8TJ31	D8TJ21	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Uncharacterized protein.	0.564
D8TJ31_VOLCA	D8TKE8_VOLCA	D8TJ31	D8TKE8	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	0.468
D8TJ31_VOLCA	D8TMM9_VOLCA	D8TJ31	D8TMM9	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Uncharacterized protein.	0.528
D8TJ31_VOLCA	D8TP77_VOLCA	D8TJ31	D8TP77	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Copper target 1 protein.	0.424
D8TJ31_VOLCA	D8TP88_VOLCA	D8TJ31	D8TP88	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.	0.468
D8TJ31_VOLCA	D8TS41_VOLCA	D8TJ31	D8TS41	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Uncharacterized protein.	0.532