(15 nodes) Mixed, incl. Response to epinephrine, and protein-N-terminal asparagine amidohydrolase activity network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TJ15_VOLCA	Uncharacterized protein. (266 aa)
	D8TJ65_VOLCA	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (3092 aa)
	D8TK61_VOLCA	Uncharacterized protein. (295 aa)
	D8TR13_VOLCA	ATE_C domain-containing protein. (683 aa)
	D8TTE3_VOLCA	Uncharacterized protein. (2821 aa)
	D8U0U5_VOLCA	Uncharacterized protein. (308 aa)
	D8U208_VOLCA	Uncharacterized protein. (595 aa)
	D8U420_VOLCA	Uncharacterized protein. (1092 aa)
	D8U525_VOLCA	hnRNP_Q_AcD domain-containing protein. (1173 aa)
	D8UAY1_VOLCA	Uncharacterized protein. (464 aa)
	D8UEB1_VOLCA	Uncharacterized protein. (438 aa)
	D8UEB2_VOLCA	Uncharacterized protein. (723 aa)
	D8UEY1_VOLCA	USP domain-containing protein; Belongs to the peptidase C19 family. (334 aa)
	D8UGL7_VOLCA	Uncharacterized protein. (55 aa)
	D8UIP9_VOLCA	HNHc domain-containing protein. (284 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TJ65_VOLCA	D8TK61_VOLCA	D8TJ65	D8TK61	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.400
D8TJ65_VOLCA	D8TR13_VOLCA	D8TJ65	D8TR13	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	ATE_C domain-containing protein.	0.488
D8TJ65_VOLCA	D8U0U5_VOLCA	D8TJ65	D8U0U5	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.402
D8TK61_VOLCA	D8TJ65_VOLCA	D8TK61	D8TJ65	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.400
D8TK61_VOLCA	D8TR13_VOLCA	D8TK61	D8TR13	Uncharacterized protein.	ATE_C domain-containing protein.	0.575
D8TK61_VOLCA	D8U0U5_VOLCA	D8TK61	D8U0U5	Uncharacterized protein.	Uncharacterized protein.	0.617
D8TR13_VOLCA	D8TJ65_VOLCA	D8TR13	D8TJ65	ATE_C domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.488
D8TR13_VOLCA	D8TK61_VOLCA	D8TR13	D8TK61	ATE_C domain-containing protein.	Uncharacterized protein.	0.575
D8TR13_VOLCA	D8U0U5_VOLCA	D8TR13	D8U0U5	ATE_C domain-containing protein.	Uncharacterized protein.	0.507
D8U0U5_VOLCA	D8TJ65_VOLCA	D8U0U5	D8TJ65	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.402
D8U0U5_VOLCA	D8TK61_VOLCA	D8U0U5	D8TK61	Uncharacterized protein.	Uncharacterized protein.	0.617
D8U0U5_VOLCA	D8TR13_VOLCA	D8U0U5	D8TR13	Uncharacterized protein.	ATE_C domain-containing protein.	0.507