15 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hstH4-8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	D8TIU6_VOLCA	Uncharacterized protein. (3261 aa)
	D8TK41_VOLCA	Uncharacterized protein. (280 aa)
	D8TKG5_VOLCA	Uncharacterized protein. (968 aa)
	D8TKK4_VOLCA	Uncharacterized protein. (773 aa)
	D8TR75_VOLCA	Uncharacterized protein. (347 aa)
	D8TW06_VOLCA	SAND domain-containing protein. (969 aa)
	D8TXP6_VOLCA	Uncharacterized protein. (1746 aa)
	D8TYY3_VOLCA	SWIRM-assoc_2 domain-containing protein. (218 aa)
	D8U262_VOLCA	Uncharacterized protein. (371 aa)
	D8U648_VOLCA	Uncharacterized protein. (462 aa)
	hstH3-11	Histone H3; Belongs to the histone H3 family. (135 aa)
	D8UAD9_VOLCA	Uncharacterized protein. (289 aa)
	D8UEK6_VOLCA	SWIB domain-containing protein. (586 aa)
	arp4	Actin-related protein Arp4; Belongs to the actin family. (431 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TIU6_VOLCA	D8TK41_VOLCA	D8TIU6	D8TK41	Uncharacterized protein.	Uncharacterized protein.	0.539
D8TIU6_VOLCA	D8TKG5_VOLCA	D8TIU6	D8TKG5	Uncharacterized protein.	Uncharacterized protein.	0.539
D8TIU6_VOLCA	D8TKK4_VOLCA	D8TIU6	D8TKK4	Uncharacterized protein.	Uncharacterized protein.	0.857
D8TIU6_VOLCA	D8TR75_VOLCA	D8TIU6	D8TR75	Uncharacterized protein.	Uncharacterized protein.	0.539
D8TIU6_VOLCA	D8TYY3_VOLCA	D8TIU6	D8TYY3	Uncharacterized protein.	SWIRM-assoc_2 domain-containing protein.	0.851
D8TIU6_VOLCA	D8U262_VOLCA	D8TIU6	D8U262	Uncharacterized protein.	Uncharacterized protein.	0.934
D8TIU6_VOLCA	D8U648_VOLCA	D8TIU6	D8U648	Uncharacterized protein.	Uncharacterized protein.	0.553
D8TIU6_VOLCA	D8UAD9_VOLCA	D8TIU6	D8UAD9	Uncharacterized protein.	Uncharacterized protein.	0.689
D8TIU6_VOLCA	D8UEK6_VOLCA	D8TIU6	D8UEK6	Uncharacterized protein.	SWIB domain-containing protein.	0.814
D8TIU6_VOLCA	arp4	D8TIU6	D8UHX7	Uncharacterized protein.	Actin-related protein Arp4; Belongs to the actin family.	0.713
D8TIU6_VOLCA	hstH4-8	D8TIU6	D8THQ3	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.447
D8TK41_VOLCA	D8TIU6_VOLCA	D8TK41	D8TIU6	Uncharacterized protein.	Uncharacterized protein.	0.539
D8TK41_VOLCA	D8TKK4_VOLCA	D8TK41	D8TKK4	Uncharacterized protein.	Uncharacterized protein.	0.658
D8TK41_VOLCA	D8TXP6_VOLCA	D8TK41	D8TXP6	Uncharacterized protein.	Uncharacterized protein.	0.539
D8TK41_VOLCA	D8TYY3_VOLCA	D8TK41	D8TYY3	Uncharacterized protein.	SWIRM-assoc_2 domain-containing protein.	0.585
D8TK41_VOLCA	D8U262_VOLCA	D8TK41	D8U262	Uncharacterized protein.	Uncharacterized protein.	0.686
D8TK41_VOLCA	D8UAD9_VOLCA	D8TK41	D8UAD9	Uncharacterized protein.	Uncharacterized protein.	0.578
D8TK41_VOLCA	D8UEK6_VOLCA	D8TK41	D8UEK6	Uncharacterized protein.	SWIB domain-containing protein.	0.672
D8TK41_VOLCA	arp4	D8TK41	D8UHX7	Uncharacterized protein.	Actin-related protein Arp4; Belongs to the actin family.	0.671
D8TK41_VOLCA	hstH3-11	D8TK41	D8U7Z2	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.403