(41 nodes) Ribosomal protein network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl20	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (112 aa)
	prpL15	Plastid/chloroplast ribosomal protein L15; Belongs to the universal ribosomal protein uL15 family. (248 aa)
	mrpL11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (160 aa)
	D8THM0_VOLCA	Mitochondrial ribosomal protein L1, imported to mitochondria. (437 aa)
	D8THR4_VOLCA	50S ribosomal protein L22, chloroplast; Belongs to the universal ribosomal protein uL22 family. (177 aa)
	prpl13	Plastid/chloroplast ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (226 aa)
	D8TIF3_VOLCA	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (256 aa)
	prpL28	Plastid/chloroplast ribosomal protein L28. (196 aa)
	prpL9	Plastid/chloroplast ribosomal protein L9. (209 aa)
	prpL1	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (302 aa)
	mrpL12	Mitochondrial ribosomal protein L7/L12. (194 aa)
	D8TK70_VOLCA	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (476 aa)
	mrpL17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (187 aa)
	mrpL20	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa)
	D8TQA7_VOLCA	Uncharacterized protein. (233 aa)
	prpL31	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (137 aa)
	prpL12	Plastid/chloroplast ribosomal protein L7/L12. (162 aa)
	prpL27	Plastid/chloroplast ribosomal protein L27. (161 aa)
	prpL21	Plastid/chloroplast ribosomal protein L21. (179 aa)
	mrpS7	Mitochondrial ribosomal protein S7. (106 aa)
	rpl7	Component of cytosolic 80S ribosome and 60S large subunit. (239 aa)
	rps15	Component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	mrpL19	Mitochondrial ribosomal protein L19. (193 aa)
	prpL11	Plastid/chloroplast ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (141 aa)
	mrpL33	Mitochondrial ribosomal protein L33. (57 aa)
	prpL24	Plastid/chloroplast ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (178 aa)
	prpL3	Plastid/chloroplast ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (259 aa)
	prpL17	Plastid/chloroplast ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (177 aa)
	mrpL36	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (117 aa)
	D8U881_VOLCA	RIBOSOMAL_L9 domain-containing protein. (179 aa)
	D8U8G6_VOLCA	Ribosomal_L18e/L15P domain-containing protein. (325 aa)
	D8U9H7_VOLCA	Trigger_N domain-containing protein. (616 aa)
	mrpL21	Mitochondrial ribosomal protein L21. (403 aa)
	mrpL3	Mitochondrial ribosomal protein L3. (428 aa)
	prpL19	Plastid/chloroplast ribosomal protein L19. (154 aa)
	prpL4	Plastid/chloroplast ribosomal protein L4. (246 aa)
	mrpL2	Mitochondrial ribosomal protein L2. (356 aa)
	mrpL4	Mitochondrial ribosomal protein L4. (357 aa)
	efg8	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (453 aa)
	mrpL13	Mitochondrial ribosomal protein L13. (229 aa)
	rpl23A	Component of cytosolic 80S ribosome and 60S large subunit. (147 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8THM0_VOLCA	D8THR4_VOLCA	D8THM0	D8THR4	Mitochondrial ribosomal protein L1, imported to mitochondria.	50S ribosomal protein L22, chloroplast; Belongs to the universal ribosomal protein uL22 family.	0.968
D8THM0_VOLCA	D8TIF3_VOLCA	D8THM0	D8TIF3	Mitochondrial ribosomal protein L1, imported to mitochondria.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.921
D8THM0_VOLCA	D8TK70_VOLCA	D8THM0	D8TK70	Mitochondrial ribosomal protein L1, imported to mitochondria.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.948
D8THM0_VOLCA	D8TQA7_VOLCA	D8THM0	D8TQA7	Mitochondrial ribosomal protein L1, imported to mitochondria.	Uncharacterized protein.	0.887
D8THM0_VOLCA	D8U881_VOLCA	D8THM0	D8U881	Mitochondrial ribosomal protein L1, imported to mitochondria.	RIBOSOMAL_L9 domain-containing protein.	0.883
D8THM0_VOLCA	D8U8G6_VOLCA	D8THM0	D8U8G6	Mitochondrial ribosomal protein L1, imported to mitochondria.	Ribosomal_L18e/L15P domain-containing protein.	0.887
D8THM0_VOLCA	D8U9H7_VOLCA	D8THM0	D8U9H7	Mitochondrial ribosomal protein L1, imported to mitochondria.	Trigger_N domain-containing protein.	0.834
D8THM0_VOLCA	efg8	D8THM0	D8UI05	Mitochondrial ribosomal protein L1, imported to mitochondria.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.967
D8THM0_VOLCA	mrpL11	D8THM0	D8THF5	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.904
D8THM0_VOLCA	mrpL12	D8THM0	D8TJI4	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L7/L12.	0.889
D8THM0_VOLCA	mrpL13	D8THM0	D8UJ23	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L13.	0.891
D8THM0_VOLCA	mrpL17	D8THM0	D8TKT1	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.889
D8THM0_VOLCA	mrpL19	D8THM0	D8TY39	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L19.	0.892
D8THM0_VOLCA	mrpL2	D8THM0	D8UFM3	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L2.	0.958
D8THM0_VOLCA	mrpL20	D8THM0	D8TQ00	Mitochondrial ribosomal protein L1, imported to mitochondria.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.883
D8THM0_VOLCA	mrpL21	D8THM0	D8UC88	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L21.	0.891
D8THM0_VOLCA	mrpL3	D8THM0	D8UCL7	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L3.	0.905
D8THM0_VOLCA	mrpL33	D8THM0	D8U0G5	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L33.	0.953
D8THM0_VOLCA	mrpL36	D8THM0	D8U823	Mitochondrial ribosomal protein L1, imported to mitochondria.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.963
D8THM0_VOLCA	mrpL4	D8THM0	D8UHH6	Mitochondrial ribosomal protein L1, imported to mitochondria.	Mitochondrial ribosomal protein L4.	0.904