(17 nodes) Nuclear exosome (RNase complex), and rRNA-processing arch domain network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TH53_VOLCA	Uncharacterized protein; Belongs to the RNR ribonuclease family. (932 aa)
	D8TJ90_VOLCA	Uncharacterized protein. (311 aa)
	D8TJQ8_VOLCA	Uncharacterized protein. (245 aa)
	D8TN51_VOLCA	S1 motif domain-containing protein. (321 aa)
	D8TP12_VOLCA	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (1382 aa)
	D8TPB1_VOLCA	3'-5' exonuclease domain-containing protein. (191 aa)
	D8TR89_VOLCA	RNase_PH domain-containing protein. (238 aa)
	D8TVA9_VOLCA	Uncharacterized protein. (311 aa)
	D8TY61_VOLCA	KH_dom_type_1 domain-containing protein. (224 aa)
	D8U141_VOLCA	RNase_PH domain-containing protein. (247 aa)
	D8U6D1_VOLCA	Uncharacterized protein. (201 aa)
	D8U7N7_VOLCA	Uncharacterized protein. (182 aa)
	D8U7P1_VOLCA	3'-5' exonuclease domain-containing protein. (1044 aa)
	D8UD65_VOLCA	Uncharacterized protein. (1484 aa)
	D8UH46_VOLCA	Uncharacterized protein. (280 aa)
	D8UI23_VOLCA	Uncharacterized protein. (991 aa)
	D8UJX9_VOLCA	Uncharacterized protein. (516 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TH53_VOLCA	D8TJ90_VOLCA	D8TH53	D8TJ90	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.939
D8TH53_VOLCA	D8TJQ8_VOLCA	D8TH53	D8TJQ8	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.866
D8TH53_VOLCA	D8TN51_VOLCA	D8TH53	D8TN51	Uncharacterized protein; Belongs to the RNR ribonuclease family.	S1 motif domain-containing protein.	0.956
D8TH53_VOLCA	D8TPB1_VOLCA	D8TH53	D8TPB1	Uncharacterized protein; Belongs to the RNR ribonuclease family.	3'-5' exonuclease domain-containing protein.	0.701
D8TH53_VOLCA	D8TR89_VOLCA	D8TH53	D8TR89	Uncharacterized protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.837
D8TH53_VOLCA	D8TVA9_VOLCA	D8TH53	D8TVA9	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.915
D8TH53_VOLCA	D8TY61_VOLCA	D8TH53	D8TY61	Uncharacterized protein; Belongs to the RNR ribonuclease family.	KH_dom_type_1 domain-containing protein.	0.955
D8TH53_VOLCA	D8U141_VOLCA	D8TH53	D8U141	Uncharacterized protein; Belongs to the RNR ribonuclease family.	RNase_PH domain-containing protein.	0.905
D8TH53_VOLCA	D8U6D1_VOLCA	D8TH53	D8U6D1	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.959
D8TH53_VOLCA	D8U7N7_VOLCA	D8TH53	D8U7N7	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.673
D8TH53_VOLCA	D8U7P1_VOLCA	D8TH53	D8U7P1	Uncharacterized protein; Belongs to the RNR ribonuclease family.	3'-5' exonuclease domain-containing protein.	0.673
D8TH53_VOLCA	D8UD65_VOLCA	D8TH53	D8UD65	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.759
D8TH53_VOLCA	D8UH46_VOLCA	D8TH53	D8UH46	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.756
D8TH53_VOLCA	D8UI23_VOLCA	D8TH53	D8UI23	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.751
D8TH53_VOLCA	D8UJX9_VOLCA	D8TH53	D8UJX9	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.944
D8TJ90_VOLCA	D8TH53_VOLCA	D8TJ90	D8TH53	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.939
D8TJ90_VOLCA	D8TJQ8_VOLCA	D8TJ90	D8TJQ8	Uncharacterized protein.	Uncharacterized protein.	0.988
D8TJ90_VOLCA	D8TN51_VOLCA	D8TJ90	D8TN51	Uncharacterized protein.	S1 motif domain-containing protein.	0.998
D8TJ90_VOLCA	D8TP12_VOLCA	D8TJ90	D8TP12	Uncharacterized protein.	RNB domain-containing protein; Belongs to the RNR ribonuclease family.	0.909
D8TJ90_VOLCA	D8TPB1_VOLCA	D8TJ90	D8TPB1	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.915