(54 nodes) Ribosomal large subunit biogenesis, and ATP-dependent RNA helicase DEAD-box, conserved site network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TGZ0_VOLCA	BRCT domain-containing protein. (470 aa)
	D8TI00_VOLCA	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (272 aa)
	D8TI56_VOLCA	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (579 aa)
	D8TI57_VOLCA	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (172 aa)
	D8TIN5_VOLCA	Uncharacterized protein. (347 aa)
	D8TJL5_VOLCA	Uncharacterized protein. (205 aa)
	D8TJM9_VOLCA	WD_REPEATS_REGION domain-containing protein. (449 aa)
	D8TLL8_VOLCA	Peptidase_M24 domain-containing protein. (382 aa)
	D8TLW5_VOLCA	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (680 aa)
	D8TNR2_VOLCA	DEAD-box ATP-dependent RNA helicase 29. (1338 aa)
	D8TP13_VOLCA	Uncharacterized protein. (260 aa)
	D8TPM7_VOLCA	Uncharacterized protein. (836 aa)
	D8TQJ3_VOLCA	RRM domain-containing protein. (185 aa)
	eif6A	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	D8TSD9_VOLCA	G domain-containing protein. (84 aa)
	D8TTM2_VOLCA	Uncharacterized protein. (496 aa)
	D8TUL8_VOLCA	Brix domain-containing protein. (321 aa)
	D8TVA3_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (366 aa)
	D8TVI0_VOLCA	Uncharacterized protein. (329 aa)
	D8TW80_VOLCA	Uncharacterized protein. (580 aa)
	D8TWE7_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (533 aa)
	D8TWH6_VOLCA	Uncharacterized protein. (1262 aa)
	D8TXJ3_VOLCA	Brix domain-containing protein. (319 aa)
	D8TYG6_VOLCA	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (470 aa)
	D8TZA8_VOLCA	Uncharacterized protein. (370 aa)
	D8TZE3_VOLCA	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (717 aa)
	D8TZN1_VOLCA	Ribosomal_L28e domain-containing protein. (399 aa)
	D8U0B5_VOLCA	Uncharacterized protein. (660 aa)
	D8U0E6_VOLCA	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (382 aa)
	D8U0M5_VOLCA	Uncharacterized protein. (847 aa)
	D8U346_VOLCA	Uncharacterized protein. (762 aa)
	D8U3I5_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (602 aa)
	D8U3Y8_VOLCA	Uncharacterized protein. (207 aa)
	D8U3Y9_VOLCA	CP-type G domain-containing protein. (378 aa)
	puf1	Pumilio family protein. (793 aa)
	D8U4B1_VOLCA	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (179 aa)
	D8U4E7_VOLCA	Uncharacterized protein. (358 aa)
	D8U4F8_VOLCA	Uncharacterized protein. (440 aa)
	D8U4M4_VOLCA	Uncharacterized protein. (402 aa)
	D8U6I4_VOLCA	Uncharacterized protein. (270 aa)
	D8U6J2_VOLCA	RNA helicase. (485 aa)
	D8U704_VOLCA	Uncharacterized protein. (684 aa)
	D8U7A0_VOLCA	Uncharacterized protein. (1210 aa)
	D8U8W3_VOLCA	TRASH domain-containing protein. (164 aa)
	D8U9D8_VOLCA	Uncharacterized protein. (473 aa)
	D8UBS1_VOLCA	Brix domain-containing protein. (332 aa)
	D8UCP4_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (495 aa)
	D8UDF4_VOLCA	Uncharacterized protein. (301 aa)
	D8UG18_VOLCA	BOP1NT domain-containing protein. (714 aa)
	MTF0870	MTF0870. (334 aa)
	D8UI61_VOLCA	G domain-containing protein. (287 aa)
	D8UIF0_VOLCA	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (568 aa)
	D8UII4_VOLCA	Brix domain-containing protein. (356 aa)
	D8UIY5_VOLCA	Uncharacterized protein. (477 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TGZ0_VOLCA	D8TI00_VOLCA	D8TGZ0	D8TI00	BRCT domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.991
D8TGZ0_VOLCA	D8TI56_VOLCA	D8TGZ0	D8TI56	BRCT domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.942
D8TGZ0_VOLCA	D8TI57_VOLCA	D8TGZ0	D8TI57	BRCT domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.942
D8TGZ0_VOLCA	D8TIN5_VOLCA	D8TGZ0	D8TIN5	BRCT domain-containing protein.	Uncharacterized protein.	0.922
D8TGZ0_VOLCA	D8TJL5_VOLCA	D8TGZ0	D8TJL5	BRCT domain-containing protein.	Uncharacterized protein.	0.971
D8TGZ0_VOLCA	D8TJM9_VOLCA	D8TGZ0	D8TJM9	BRCT domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.859
D8TGZ0_VOLCA	D8TLL8_VOLCA	D8TGZ0	D8TLL8	BRCT domain-containing protein.	Peptidase_M24 domain-containing protein.	0.957
D8TGZ0_VOLCA	D8TLW5_VOLCA	D8TGZ0	D8TLW5	BRCT domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.975
D8TGZ0_VOLCA	D8TNR2_VOLCA	D8TGZ0	D8TNR2	BRCT domain-containing protein.	DEAD-box ATP-dependent RNA helicase 29.	0.949
D8TGZ0_VOLCA	D8TP13_VOLCA	D8TGZ0	D8TP13	BRCT domain-containing protein.	Uncharacterized protein.	0.993
D8TGZ0_VOLCA	D8TPM7_VOLCA	D8TGZ0	D8TPM7	BRCT domain-containing protein.	Uncharacterized protein.	0.934
D8TGZ0_VOLCA	D8TQJ3_VOLCA	D8TGZ0	D8TQJ3	BRCT domain-containing protein.	RRM domain-containing protein.	0.991
D8TGZ0_VOLCA	D8TSD9_VOLCA	D8TGZ0	D8TSD9	BRCT domain-containing protein.	G domain-containing protein.	0.892
D8TGZ0_VOLCA	D8TTM2_VOLCA	D8TGZ0	D8TTM2	BRCT domain-containing protein.	Uncharacterized protein.	0.990
D8TGZ0_VOLCA	D8TUL8_VOLCA	D8TGZ0	D8TUL8	BRCT domain-containing protein.	Brix domain-containing protein.	0.971
D8TGZ0_VOLCA	D8TVA3_VOLCA	D8TGZ0	D8TVA3	BRCT domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.894
D8TGZ0_VOLCA	D8TVI0_VOLCA	D8TGZ0	D8TVI0	BRCT domain-containing protein.	Uncharacterized protein.	0.998
D8TGZ0_VOLCA	D8TW80_VOLCA	D8TGZ0	D8TW80	BRCT domain-containing protein.	Uncharacterized protein.	0.795
D8TGZ0_VOLCA	D8TWE7_VOLCA	D8TGZ0	D8TWE7	BRCT domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.918
D8TGZ0_VOLCA	D8TWH6_VOLCA	D8TGZ0	D8TWH6	BRCT domain-containing protein.	Uncharacterized protein.	0.918