(28 nodes) Preribosome, large subunit precursor, and Ribosomal large subunit biogenesis network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	D8TGZ0_VOLCA	BRCT domain-containing protein. (470 aa)
	D8TI00_VOLCA	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (272 aa)
	D8TJL5_VOLCA	Uncharacterized protein. (205 aa)
	D8TLW5_VOLCA	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (680 aa)
	D8TP13_VOLCA	Uncharacterized protein. (260 aa)
	D8TQJ3_VOLCA	RRM domain-containing protein. (185 aa)
	D8TVI0_VOLCA	Uncharacterized protein. (329 aa)
	D8TW80_VOLCA	Uncharacterized protein. (580 aa)
	D8TXJ3_VOLCA	Brix domain-containing protein. (319 aa)
	D8TYG6_VOLCA	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (470 aa)
	D8TZE3_VOLCA	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (717 aa)
	D8TZN1_VOLCA	Ribosomal_L28e domain-containing protein. (399 aa)
	D8U0B5_VOLCA	Uncharacterized protein. (660 aa)
	D8U0E6_VOLCA	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (382 aa)
	D8U3Y8_VOLCA	Uncharacterized protein. (207 aa)
	D8U3Y9_VOLCA	CP-type G domain-containing protein. (378 aa)
	puf1	Pumilio family protein. (793 aa)
	D8U4B1_VOLCA	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (179 aa)
	D8U4F8_VOLCA	Uncharacterized protein. (440 aa)
	D8U4M4_VOLCA	Uncharacterized protein. (402 aa)
	D8U6I4_VOLCA	Uncharacterized protein. (270 aa)
	D8U704_VOLCA	Uncharacterized protein. (684 aa)
	D8U7A0_VOLCA	Uncharacterized protein. (1210 aa)
	D8U8W3_VOLCA	TRASH domain-containing protein. (164 aa)
	D8UBS1_VOLCA	Brix domain-containing protein. (332 aa)
	D8UG18_VOLCA	BOP1NT domain-containing protein. (714 aa)
	D8UII4_VOLCA	Brix domain-containing protein. (356 aa)
	D8UIY5_VOLCA	Uncharacterized protein. (477 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TGZ0_VOLCA	D8TI00_VOLCA	D8TGZ0	D8TI00	BRCT domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.991
D8TGZ0_VOLCA	D8TJL5_VOLCA	D8TGZ0	D8TJL5	BRCT domain-containing protein.	Uncharacterized protein.	0.971
D8TGZ0_VOLCA	D8TLW5_VOLCA	D8TGZ0	D8TLW5	BRCT domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.975
D8TGZ0_VOLCA	D8TP13_VOLCA	D8TGZ0	D8TP13	BRCT domain-containing protein.	Uncharacterized protein.	0.993
D8TGZ0_VOLCA	D8TQJ3_VOLCA	D8TGZ0	D8TQJ3	BRCT domain-containing protein.	RRM domain-containing protein.	0.991
D8TGZ0_VOLCA	D8TVI0_VOLCA	D8TGZ0	D8TVI0	BRCT domain-containing protein.	Uncharacterized protein.	0.998
D8TGZ0_VOLCA	D8TW80_VOLCA	D8TGZ0	D8TW80	BRCT domain-containing protein.	Uncharacterized protein.	0.795
D8TGZ0_VOLCA	D8TXJ3_VOLCA	D8TGZ0	D8TXJ3	BRCT domain-containing protein.	Brix domain-containing protein.	0.977
D8TGZ0_VOLCA	D8TYG6_VOLCA	D8TGZ0	D8TYG6	BRCT domain-containing protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.999
D8TGZ0_VOLCA	D8TZE3_VOLCA	D8TGZ0	D8TZE3	BRCT domain-containing protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.993
D8TGZ0_VOLCA	D8TZN1_VOLCA	D8TGZ0	D8TZN1	BRCT domain-containing protein.	Ribosomal_L28e domain-containing protein.	0.980
D8TGZ0_VOLCA	D8U0B5_VOLCA	D8TGZ0	D8U0B5	BRCT domain-containing protein.	Uncharacterized protein.	0.968
D8TGZ0_VOLCA	D8U0E6_VOLCA	D8TGZ0	D8U0E6	BRCT domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.953
D8TGZ0_VOLCA	D8U3Y8_VOLCA	D8TGZ0	D8U3Y8	BRCT domain-containing protein.	Uncharacterized protein.	0.978
D8TGZ0_VOLCA	D8U3Y9_VOLCA	D8TGZ0	D8U3Y9	BRCT domain-containing protein.	CP-type G domain-containing protein.	0.978
D8TGZ0_VOLCA	D8U4B1_VOLCA	D8TGZ0	D8U4B1	BRCT domain-containing protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.975
D8TGZ0_VOLCA	D8U4F8_VOLCA	D8TGZ0	D8U4F8	BRCT domain-containing protein.	Uncharacterized protein.	0.985
D8TGZ0_VOLCA	D8U4M4_VOLCA	D8TGZ0	D8U4M4	BRCT domain-containing protein.	Uncharacterized protein.	0.906
D8TGZ0_VOLCA	D8U6I4_VOLCA	D8TGZ0	D8U6I4	BRCT domain-containing protein.	Uncharacterized protein.	0.967
D8TGZ0_VOLCA	D8U704_VOLCA	D8TGZ0	D8U704	BRCT domain-containing protein.	Uncharacterized protein.	0.975