(5 nodes) Preribosome, large subunit precursor network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TW80_VOLCA	Uncharacterized protein. (580 aa)
	D8TXJ3_VOLCA	Brix domain-containing protein. (319 aa)
	D8TZN1_VOLCA	Ribosomal_L28e domain-containing protein. (399 aa)
	D8U0B5_VOLCA	Uncharacterized protein. (660 aa)
	D8U4M4_VOLCA	Uncharacterized protein. (402 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TW80_VOLCA	D8TXJ3_VOLCA	D8TW80	D8TXJ3	Uncharacterized protein.	Brix domain-containing protein.	0.969
D8TW80_VOLCA	D8TZN1_VOLCA	D8TW80	D8TZN1	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.937
D8TW80_VOLCA	D8U0B5_VOLCA	D8TW80	D8U0B5	Uncharacterized protein.	Uncharacterized protein.	0.966
D8TW80_VOLCA	D8U4M4_VOLCA	D8TW80	D8U4M4	Uncharacterized protein.	Uncharacterized protein.	0.959
D8TXJ3_VOLCA	D8TW80_VOLCA	D8TXJ3	D8TW80	Brix domain-containing protein.	Uncharacterized protein.	0.969
D8TXJ3_VOLCA	D8TZN1_VOLCA	D8TXJ3	D8TZN1	Brix domain-containing protein.	Ribosomal_L28e domain-containing protein.	0.991
D8TXJ3_VOLCA	D8U0B5_VOLCA	D8TXJ3	D8U0B5	Brix domain-containing protein.	Uncharacterized protein.	0.987
D8TXJ3_VOLCA	D8U4M4_VOLCA	D8TXJ3	D8U4M4	Brix domain-containing protein.	Uncharacterized protein.	0.965
D8TZN1_VOLCA	D8TW80_VOLCA	D8TZN1	D8TW80	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.937
D8TZN1_VOLCA	D8TXJ3_VOLCA	D8TZN1	D8TXJ3	Ribosomal_L28e domain-containing protein.	Brix domain-containing protein.	0.991
D8TZN1_VOLCA	D8U0B5_VOLCA	D8TZN1	D8U0B5	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.988
D8TZN1_VOLCA	D8U4M4_VOLCA	D8TZN1	D8U4M4	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.960
D8U0B5_VOLCA	D8TW80_VOLCA	D8U0B5	D8TW80	Uncharacterized protein.	Uncharacterized protein.	0.966
D8U0B5_VOLCA	D8TXJ3_VOLCA	D8U0B5	D8TXJ3	Uncharacterized protein.	Brix domain-containing protein.	0.987
D8U0B5_VOLCA	D8TZN1_VOLCA	D8U0B5	D8TZN1	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.988
D8U0B5_VOLCA	D8U4M4_VOLCA	D8U0B5	D8U4M4	Uncharacterized protein.	Uncharacterized protein.	0.971
D8U4M4_VOLCA	D8TW80_VOLCA	D8U4M4	D8TW80	Uncharacterized protein.	Uncharacterized protein.	0.959
D8U4M4_VOLCA	D8TXJ3_VOLCA	D8U4M4	D8TXJ3	Uncharacterized protein.	Brix domain-containing protein.	0.965
D8U4M4_VOLCA	D8TZN1_VOLCA	D8U4M4	D8TZN1	Uncharacterized protein.	Ribosomal_L28e domain-containing protein.	0.960
D8U4M4_VOLCA	D8U0B5_VOLCA	D8U4M4	D8U0B5	Uncharacterized protein.	Uncharacterized protein.	0.971