(10 nodes) Mixed, incl. RNA helicase, DEAD-box type, Q motif, and Class A/1 (Rhodopsin-like receptors) network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TJM9_VOLCA	WD_REPEATS_REGION domain-containing protein. (449 aa)
	D8TNR2_VOLCA	DEAD-box ATP-dependent RNA helicase 29. (1338 aa)
	D8TTM2_VOLCA	Uncharacterized protein. (496 aa)
	D8TUL8_VOLCA	Brix domain-containing protein. (321 aa)
	D8TVA3_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (366 aa)
	D8U0M5_VOLCA	Uncharacterized protein. (847 aa)
	D8U346_VOLCA	Uncharacterized protein. (762 aa)
	D8U3I5_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (602 aa)
	D8U4E7_VOLCA	Uncharacterized protein. (358 aa)
	D8UCP4_VOLCA	Uncharacterized protein; Belongs to the DEAD box helicase family. (495 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TJM9_VOLCA	D8TNR2_VOLCA	D8TJM9	D8TNR2	WD_REPEATS_REGION domain-containing protein.	DEAD-box ATP-dependent RNA helicase 29.	0.657
D8TJM9_VOLCA	D8TTM2_VOLCA	D8TJM9	D8TTM2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.846
D8TJM9_VOLCA	D8TUL8_VOLCA	D8TJM9	D8TUL8	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.999
D8TJM9_VOLCA	D8TVA3_VOLCA	D8TJM9	D8TVA3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.637
D8TJM9_VOLCA	D8U0M5_VOLCA	D8TJM9	D8U0M5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.838
D8TJM9_VOLCA	D8U346_VOLCA	D8TJM9	D8U346	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.702
D8TJM9_VOLCA	D8U3I5_VOLCA	D8TJM9	D8U3I5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.438
D8TJM9_VOLCA	D8U4E7_VOLCA	D8TJM9	D8U4E7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.946
D8TJM9_VOLCA	D8UCP4_VOLCA	D8TJM9	D8UCP4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.443
D8TNR2_VOLCA	D8TJM9_VOLCA	D8TNR2	D8TJM9	DEAD-box ATP-dependent RNA helicase 29.	WD_REPEATS_REGION domain-containing protein.	0.657
D8TNR2_VOLCA	D8TTM2_VOLCA	D8TNR2	D8TTM2	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein.	0.820
D8TNR2_VOLCA	D8TUL8_VOLCA	D8TNR2	D8TUL8	DEAD-box ATP-dependent RNA helicase 29.	Brix domain-containing protein.	0.936
D8TNR2_VOLCA	D8TVA3_VOLCA	D8TNR2	D8TVA3	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.763
D8TNR2_VOLCA	D8U0M5_VOLCA	D8TNR2	D8U0M5	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein.	0.764
D8TNR2_VOLCA	D8U346_VOLCA	D8TNR2	D8U346	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein.	0.746
D8TNR2_VOLCA	D8U3I5_VOLCA	D8TNR2	D8U3I5	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.832
D8TNR2_VOLCA	D8U4E7_VOLCA	D8TNR2	D8U4E7	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein.	0.882
D8TNR2_VOLCA	D8UCP4_VOLCA	D8TNR2	D8UCP4	DEAD-box ATP-dependent RNA helicase 29.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.912
D8TTM2_VOLCA	D8TJM9_VOLCA	D8TTM2	D8TJM9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.846
D8TTM2_VOLCA	D8TNR2_VOLCA	D8TTM2	D8TNR2	Uncharacterized protein.	DEAD-box ATP-dependent RNA helicase 29.	0.820