(12 nodes) Mixed, incl. Box H/ACA RNP complex, and tRNA pseudouridine synthase II, TruB network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TI62_VOLCA	Uncharacterized protein. (220 aa)
	D8TK45_VOLCA	PUA domain-containing protein. (517 aa)
	D8TMI2_VOLCA	TruB_N domain-containing protein. (115 aa)
	D8TMI3_VOLCA	TruB_N domain-containing protein. (175 aa)
	D8TSV9_VOLCA	Uncharacterized protein. (769 aa)
	D8TY87_VOLCA	Uncharacterized protein. (611 aa)
	D8TY93_VOLCA	Uncharacterized protein. (678 aa)
	D8TZC2_VOLCA	G-patch domain-containing protein. (694 aa)
	D8U021_VOLCA	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (138 aa)
	D8UC17_VOLCA	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (215 aa)
	D8UDW4_VOLCA	Uncharacterized protein. (290 aa)
	D8UKQ0_VOLCA	Uncharacterized protein. (64 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TI62_VOLCA	D8TK45_VOLCA	D8TI62	D8TK45	Uncharacterized protein.	PUA domain-containing protein.	0.501
D8TI62_VOLCA	D8TMI2_VOLCA	D8TI62	D8TMI2	Uncharacterized protein.	TruB_N domain-containing protein.	0.501
D8TI62_VOLCA	D8TMI3_VOLCA	D8TI62	D8TMI3	Uncharacterized protein.	TruB_N domain-containing protein.	0.501
D8TI62_VOLCA	D8TSV9_VOLCA	D8TI62	D8TSV9	Uncharacterized protein.	Uncharacterized protein.	0.504
D8TI62_VOLCA	D8TZC2_VOLCA	D8TI62	D8TZC2	Uncharacterized protein.	G-patch domain-containing protein.	0.600
D8TI62_VOLCA	D8UC17_VOLCA	D8TI62	D8UC17	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.504
D8TK45_VOLCA	D8TI62_VOLCA	D8TK45	D8TI62	PUA domain-containing protein.	Uncharacterized protein.	0.501
D8TK45_VOLCA	D8TSV9_VOLCA	D8TK45	D8TSV9	PUA domain-containing protein.	Uncharacterized protein.	0.902
D8TK45_VOLCA	D8TY87_VOLCA	D8TK45	D8TY87	PUA domain-containing protein.	Uncharacterized protein.	0.656
D8TK45_VOLCA	D8TY93_VOLCA	D8TK45	D8TY93	PUA domain-containing protein.	Uncharacterized protein.	0.656
D8TK45_VOLCA	D8U021_VOLCA	D8TK45	D8U021	PUA domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.970
D8TK45_VOLCA	D8UC17_VOLCA	D8TK45	D8UC17	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.916
D8TK45_VOLCA	D8UDW4_VOLCA	D8TK45	D8UDW4	PUA domain-containing protein.	Uncharacterized protein.	0.656
D8TK45_VOLCA	D8UKQ0_VOLCA	D8TK45	D8UKQ0	PUA domain-containing protein.	Uncharacterized protein.	0.967
D8TMI2_VOLCA	D8TI62_VOLCA	D8TMI2	D8TI62	TruB_N domain-containing protein.	Uncharacterized protein.	0.501
D8TMI2_VOLCA	D8TSV9_VOLCA	D8TMI2	D8TSV9	TruB_N domain-containing protein.	Uncharacterized protein.	0.902
D8TMI2_VOLCA	D8TY87_VOLCA	D8TMI2	D8TY87	TruB_N domain-containing protein.	Uncharacterized protein.	0.656
D8TMI2_VOLCA	D8TY93_VOLCA	D8TMI2	D8TY93	TruB_N domain-containing protein.	Uncharacterized protein.	0.656
D8TMI2_VOLCA	D8U021_VOLCA	D8TMI2	D8U021	TruB_N domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.970
D8TMI2_VOLCA	D8UC17_VOLCA	D8TMI2	D8UC17	TruB_N domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.902