(6 nodes) Box H/ACA RNP complex network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TK45_VOLCA	PUA domain-containing protein. (517 aa)
	D8TMI2_VOLCA	TruB_N domain-containing protein. (115 aa)
	D8TSV9_VOLCA	Uncharacterized protein. (769 aa)
	D8U021_VOLCA	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (138 aa)
	D8UC17_VOLCA	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (215 aa)
	D8UKQ0_VOLCA	Uncharacterized protein. (64 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TK45_VOLCA	D8TSV9_VOLCA	D8TK45	D8TSV9	PUA domain-containing protein.	Uncharacterized protein.	0.902
D8TK45_VOLCA	D8U021_VOLCA	D8TK45	D8U021	PUA domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.970
D8TK45_VOLCA	D8UC17_VOLCA	D8TK45	D8UC17	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.916
D8TK45_VOLCA	D8UKQ0_VOLCA	D8TK45	D8UKQ0	PUA domain-containing protein.	Uncharacterized protein.	0.967
D8TMI2_VOLCA	D8TSV9_VOLCA	D8TMI2	D8TSV9	TruB_N domain-containing protein.	Uncharacterized protein.	0.902
D8TMI2_VOLCA	D8U021_VOLCA	D8TMI2	D8U021	TruB_N domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.970
D8TMI2_VOLCA	D8UC17_VOLCA	D8TMI2	D8UC17	TruB_N domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.902
D8TMI2_VOLCA	D8UKQ0_VOLCA	D8TMI2	D8UKQ0	TruB_N domain-containing protein.	Uncharacterized protein.	0.948
D8TSV9_VOLCA	D8TK45_VOLCA	D8TSV9	D8TK45	Uncharacterized protein.	PUA domain-containing protein.	0.902
D8TSV9_VOLCA	D8TMI2_VOLCA	D8TSV9	D8TMI2	Uncharacterized protein.	TruB_N domain-containing protein.	0.902
D8TSV9_VOLCA	D8U021_VOLCA	D8TSV9	D8U021	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.990
D8TSV9_VOLCA	D8UKQ0_VOLCA	D8TSV9	D8UKQ0	Uncharacterized protein.	Uncharacterized protein.	0.971
D8U021_VOLCA	D8TK45_VOLCA	D8U021	D8TK45	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	PUA domain-containing protein.	0.970
D8U021_VOLCA	D8TMI2_VOLCA	D8U021	D8TMI2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	TruB_N domain-containing protein.	0.970
D8U021_VOLCA	D8TSV9_VOLCA	D8U021	D8TSV9	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.990
D8U021_VOLCA	D8UC17_VOLCA	D8U021	D8UC17	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.990
D8U021_VOLCA	D8UKQ0_VOLCA	D8U021	D8UKQ0	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.999
D8UC17_VOLCA	D8TK45_VOLCA	D8UC17	D8TK45	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	PUA domain-containing protein.	0.916
D8UC17_VOLCA	D8TMI2_VOLCA	D8UC17	D8TMI2	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	TruB_N domain-containing protein.	0.902
D8UC17_VOLCA	D8U021_VOLCA	D8UC17	D8U021	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.990