(6 nodes) Mixed, incl. Endoplasmic reticulum chaperone complex, and Chaperone DnaJ network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TH51_VOLCA	Uncharacterized protein. (336 aa)
	hsp70H	Heat shock protein Hsp70H; Belongs to the heat shock protein 70 family. (618 aa)
	hsp70G	Heat shock protein Hsp70G. (1103 aa)
	D8TMS9_VOLCA	Uncharacterized protein. (463 aa)
	dnj1	Molecular chaperone. (424 aa)
	dnj11	Molecular chaperone. (209 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TH51_VOLCA	D8TMS9_VOLCA	D8TH51	D8TMS9	Uncharacterized protein.	Uncharacterized protein.	0.859
D8TH51_VOLCA	dnj1	D8TH51	D8TTG2	Uncharacterized protein.	Molecular chaperone.	0.801
D8TH51_VOLCA	dnj11	D8TH51	D8UBW0	Uncharacterized protein.	Molecular chaperone.	0.732
D8TH51_VOLCA	hsp70G	D8TH51	D8TJA4	Uncharacterized protein.	Heat shock protein Hsp70G.	0.998
D8TH51_VOLCA	hsp70H	D8TH51	D8TII9	Uncharacterized protein.	Heat shock protein Hsp70H; Belongs to the heat shock protein 70 family.	0.668
D8TMS9_VOLCA	D8TH51_VOLCA	D8TMS9	D8TH51	Uncharacterized protein.	Uncharacterized protein.	0.859
D8TMS9_VOLCA	dnj1	D8TMS9	D8TTG2	Uncharacterized protein.	Molecular chaperone.	0.588
D8TMS9_VOLCA	hsp70G	D8TMS9	D8TJA4	Uncharacterized protein.	Heat shock protein Hsp70G.	0.980
D8TMS9_VOLCA	hsp70H	D8TMS9	D8TII9	Uncharacterized protein.	Heat shock protein Hsp70H; Belongs to the heat shock protein 70 family.	0.616
dnj1	D8TH51_VOLCA	D8TTG2	D8TH51	Molecular chaperone.	Uncharacterized protein.	0.801
dnj1	D8TMS9_VOLCA	D8TTG2	D8TMS9	Molecular chaperone.	Uncharacterized protein.	0.588
dnj1	dnj11	D8TTG2	D8UBW0	Molecular chaperone.	Molecular chaperone.	0.955
dnj1	hsp70G	D8TTG2	D8TJA4	Molecular chaperone.	Heat shock protein Hsp70G.	0.960
dnj1	hsp70H	D8TTG2	D8TII9	Molecular chaperone.	Heat shock protein Hsp70H; Belongs to the heat shock protein 70 family.	0.892
dnj11	D8TH51_VOLCA	D8UBW0	D8TH51	Molecular chaperone.	Uncharacterized protein.	0.732
dnj11	dnj1	D8UBW0	D8TTG2	Molecular chaperone.	Molecular chaperone.	0.955
dnj11	hsp70G	D8UBW0	D8TJA4	Molecular chaperone.	Heat shock protein Hsp70G.	0.830
dnj11	hsp70H	D8UBW0	D8TII9	Molecular chaperone.	Heat shock protein Hsp70H; Belongs to the heat shock protein 70 family.	0.735
hsp70G	D8TH51_VOLCA	D8TJA4	D8TH51	Heat shock protein Hsp70G.	Uncharacterized protein.	0.998
hsp70G	D8TMS9_VOLCA	D8TJA4	D8TMS9	Heat shock protein Hsp70G.	Uncharacterized protein.	0.980