(5 nodes) RQC complex network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TMF7_VOLCA	Uncharacterized protein. (677 aa)
	D8TU53_VOLCA	RING-type domain-containing protein. (161 aa)
	D8U8T5_VOLCA	ANK_REP_REGION domain-containing protein. (645 aa)
	D8UIY8_VOLCA	NFACT-C domain-containing protein. (115 aa)
	D8UIY9_VOLCA	NFACT-R_1 domain-containing protein. (744 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TMF7_VOLCA	D8TU53_VOLCA	D8TMF7	D8TU53	Uncharacterized protein.	RING-type domain-containing protein.	0.755
D8TMF7_VOLCA	D8U8T5_VOLCA	D8TMF7	D8U8T5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.595
D8TMF7_VOLCA	D8UIY8_VOLCA	D8TMF7	D8UIY8	Uncharacterized protein.	NFACT-C domain-containing protein.	0.574
D8TMF7_VOLCA	D8UIY9_VOLCA	D8TMF7	D8UIY9	Uncharacterized protein.	NFACT-R_1 domain-containing protein.	0.574
D8TU53_VOLCA	D8TMF7_VOLCA	D8TU53	D8TMF7	RING-type domain-containing protein.	Uncharacterized protein.	0.755
D8TU53_VOLCA	D8U8T5_VOLCA	D8TU53	D8U8T5	RING-type domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.532
D8TU53_VOLCA	D8UIY8_VOLCA	D8TU53	D8UIY8	RING-type domain-containing protein.	NFACT-C domain-containing protein.	0.848
D8TU53_VOLCA	D8UIY9_VOLCA	D8TU53	D8UIY9	RING-type domain-containing protein.	NFACT-R_1 domain-containing protein.	0.848
D8U8T5_VOLCA	D8TMF7_VOLCA	D8U8T5	D8TMF7	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.595
D8U8T5_VOLCA	D8TU53_VOLCA	D8U8T5	D8TU53	ANK_REP_REGION domain-containing protein.	RING-type domain-containing protein.	0.532
D8U8T5_VOLCA	D8UIY8_VOLCA	D8U8T5	D8UIY8	ANK_REP_REGION domain-containing protein.	NFACT-C domain-containing protein.	0.483
D8U8T5_VOLCA	D8UIY9_VOLCA	D8U8T5	D8UIY9	ANK_REP_REGION domain-containing protein.	NFACT-R_1 domain-containing protein.	0.483
D8UIY8_VOLCA	D8TMF7_VOLCA	D8UIY8	D8TMF7	NFACT-C domain-containing protein.	Uncharacterized protein.	0.574
D8UIY8_VOLCA	D8TU53_VOLCA	D8UIY8	D8TU53	NFACT-C domain-containing protein.	RING-type domain-containing protein.	0.848
D8UIY8_VOLCA	D8U8T5_VOLCA	D8UIY8	D8U8T5	NFACT-C domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.483
D8UIY8_VOLCA	D8UIY9_VOLCA	D8UIY8	D8UIY9	NFACT-C domain-containing protein.	NFACT-R_1 domain-containing protein.	0.841
D8UIY9_VOLCA	D8TMF7_VOLCA	D8UIY9	D8TMF7	NFACT-R_1 domain-containing protein.	Uncharacterized protein.	0.574
D8UIY9_VOLCA	D8TU53_VOLCA	D8UIY9	D8TU53	NFACT-R_1 domain-containing protein.	RING-type domain-containing protein.	0.848
D8UIY9_VOLCA	D8U8T5_VOLCA	D8UIY9	D8U8T5	NFACT-R_1 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.483
D8UIY9_VOLCA	D8UIY8_VOLCA	D8UIY9	D8UIY8	NFACT-R_1 domain-containing protein.	NFACT-C domain-containing protein.	0.841