27 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TL26_VOLCA	Uncharacterized protein. (226 aa)
	D8UL72_VOLCA	Uso1_p115_C domain-containing protein. (577 aa)
	gos1	Qb-SNARE, Gos1/GS28-family. (257 aa)
	D8UIU0_VOLCA	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (144 aa)
	D8UIT9_VOLCA	Uncharacterized protein. (140 aa)
	D8UF52_VOLCA	Uncharacterized protein. (432 aa)
	D8U8E5_VOLCA	Uncharacterized protein. (3311 aa)
	D8U453_VOLCA	Uncharacterized protein. (995 aa)
	D8U2P5_VOLCA	Uncharacterized protein. (612 aa)
	syp3	Qa-SNARE, Sed5/Syntaxin5-family; Belongs to the syntaxin family. (348 aa)
	ykt6	Uncharacterized protein ykt6; Belongs to the synaptobrevin family. (202 aa)
	D8TYH3_VOLCA	Vps39_2 domain-containing protein. (1432 aa)
	syp5	Qc-SNARE, Syn8/Syntaxin8-family; Belongs to the syntaxin family. (234 aa)
	D8TX60_VOLCA	Uncharacterized protein. (1887 aa)
	D8TX34_VOLCA	WD_REPEATS_REGION domain-containing protein. (340 aa)
	D8TX33_VOLCA	Uncharacterized protein. (227 aa)
	D8TWX8_VOLCA	Uncharacterized protein. (3522 aa)
	syp71	Qc-SNARE, SYP7-family. (314 aa)
	vti1	Qb-SNARE, VTI1-family. (229 aa)
	memb1	Qb-SNARE, Bos1/Membrin family. (245 aa)
	sec22	R-SNARE, Sec22-family; Belongs to the synaptobrevin family. (219 aa)
	D8TR41_VOLCA	Uncharacterized protein. (1857 aa)
	syp1	Qa-SNARE, Sso1/Syntaxin1-type; Belongs to the syntaxin family. (334 aa)
	syp4	Qa-SNARE, Tlg2/Syntaxin16-family; Belongs to the syntaxin family. (310 aa)
	syp6	Qc-SNARE, Tlg1/Syntaxin 6-family; Belongs to the syntaxin family. (225 aa)
	D8THQ9_VOLCA	Subunit of VPS-C complex. (1362 aa)
	D8THN0_VOLCA	Uncharacterized protein. (285 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8THQ9_VOLCA	D8TR41_VOLCA	D8THQ9	D8TR41	Subunit of VPS-C complex.	Uncharacterized protein.	0.419
D8THQ9_VOLCA	D8TWX8_VOLCA	D8THQ9	D8TWX8	Subunit of VPS-C complex.	Uncharacterized protein.	0.904
D8THQ9_VOLCA	D8TX33_VOLCA	D8THQ9	D8TX33	Subunit of VPS-C complex.	Uncharacterized protein.	0.856
D8THQ9_VOLCA	D8TX34_VOLCA	D8THQ9	D8TX34	Subunit of VPS-C complex.	WD_REPEATS_REGION domain-containing protein.	0.856
D8THQ9_VOLCA	D8U453_VOLCA	D8THQ9	D8U453	Subunit of VPS-C complex.	Uncharacterized protein.	0.941
D8THQ9_VOLCA	syp5	D8THQ9	D8TYH2	Subunit of VPS-C complex.	Qc-SNARE, Syn8/Syntaxin8-family; Belongs to the syntaxin family.	0.514
D8THQ9_VOLCA	syp6	D8THQ9	D8TJS5	Subunit of VPS-C complex.	Qc-SNARE, Tlg1/Syntaxin 6-family; Belongs to the syntaxin family.	0.514
D8THQ9_VOLCA	vti1	D8THQ9	D8TSD7	Subunit of VPS-C complex.	Qb-SNARE, VTI1-family.	0.784
D8THQ9_VOLCA	ykt6	D8THQ9	D8TYP5	Subunit of VPS-C complex.	Uncharacterized protein ykt6; Belongs to the synaptobrevin family.	0.767
D8TR41_VOLCA	D8THQ9_VOLCA	D8TR41	D8THQ9	Uncharacterized protein.	Subunit of VPS-C complex.	0.419
D8TR41_VOLCA	D8TYH3_VOLCA	D8TR41	D8TYH3	Uncharacterized protein.	Vps39_2 domain-containing protein.	0.419
D8TR41_VOLCA	D8U453_VOLCA	D8TR41	D8U453	Uncharacterized protein.	Uncharacterized protein.	0.610
D8TWX8_VOLCA	D8THQ9_VOLCA	D8TWX8	D8THQ9	Uncharacterized protein.	Subunit of VPS-C complex.	0.904
D8TWX8_VOLCA	D8TX33_VOLCA	D8TWX8	D8TX33	Uncharacterized protein.	Uncharacterized protein.	0.565
D8TWX8_VOLCA	D8TX34_VOLCA	D8TWX8	D8TX34	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.565
D8TWX8_VOLCA	D8TYH3_VOLCA	D8TWX8	D8TYH3	Uncharacterized protein.	Vps39_2 domain-containing protein.	0.904
D8TWX8_VOLCA	D8U453_VOLCA	D8TWX8	D8U453	Uncharacterized protein.	Uncharacterized protein.	0.968
D8TWX8_VOLCA	syp5	D8TWX8	D8TYH2	Uncharacterized protein.	Qc-SNARE, Syn8/Syntaxin8-family; Belongs to the syntaxin family.	0.449
D8TWX8_VOLCA	syp6	D8TWX8	D8TJS5	Uncharacterized protein.	Qc-SNARE, Tlg1/Syntaxin 6-family; Belongs to the syntaxin family.	0.449
D8TX33_VOLCA	D8THQ9_VOLCA	D8TX33	D8THQ9	Uncharacterized protein.	Subunit of VPS-C complex.	0.856