26 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab23	Uncharacterized protein rab23. (254 aa)
	cdc48	Uncharacterized protein cdc48; Belongs to the AAA ATPase family. (815 aa)
	D8TLT4_VOLCA	Uncharacterized protein. (625 aa)
	D8TN22_VOLCA	Uncharacterized protein. (1966 aa)
	D8TP71_VOLCA	Uncharacterized protein. (1101 aa)
	D8TPY1_VOLCA	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (256 aa)
	D8TQP2_VOLCA	Uncharacterized protein. (1711 aa)
	D8TX33_VOLCA	Uncharacterized protein. (227 aa)
	D8TX34_VOLCA	WD_REPEATS_REGION domain-containing protein. (340 aa)
	D8TXB7_VOLCA	Uncharacterized protein. (179 aa)
	apg7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (723 aa)
	apg6	Autophagy protein. (256 aa)
	D8U0L8_VOLCA	Ubiquitin-like domain-containing protein. (1847 aa)
	apg3	Autophagy-related protein 3. (335 aa)
	D8U1U5_VOLCA	Uncharacterized protein. (1230 aa)
	D8U5M8_VOLCA	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (724 aa)
	D8U5N5_VOLCA	Uncharacterized protein. (284 aa)
	D8U6W4_VOLCA	Chorein_N domain-containing protein. (2772 aa)
	D8U794_VOLCA	Uncharacterized protein. (1122 aa)
	pig8	P53-induced protein 8. (302 aa)
	D8UAY9_VOLCA	Uncharacterized protein. (351 aa)
	D8UB43_VOLCA	Uncharacterized protein. (1749 aa)
	D8UB54_VOLCA	Uncharacterized protein. (1210 aa)
	D8UD92_VOLCA	RRM domain-containing protein. (2378 aa)
	D8UH52_VOLCA	WD_REPEATS_REGION domain-containing protein. (746 aa)
	D8UMM1_VOLCA	Protein kinase domain-containing protein. (340 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TLT4_VOLCA	D8TN22_VOLCA	D8TLT4	D8TN22	Uncharacterized protein.	Uncharacterized protein.	0.785
D8TLT4_VOLCA	D8TP71_VOLCA	D8TLT4	D8TP71	Uncharacterized protein.	Uncharacterized protein.	0.448
D8TLT4_VOLCA	D8TPY1_VOLCA	D8TLT4	D8TPY1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.940
D8TLT4_VOLCA	D8TXB7_VOLCA	D8TLT4	D8TXB7	Uncharacterized protein.	Uncharacterized protein.	0.574
D8TLT4_VOLCA	D8U0L8_VOLCA	D8TLT4	D8U0L8	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.448
D8TLT4_VOLCA	D8U1U5_VOLCA	D8TLT4	D8U1U5	Uncharacterized protein.	Uncharacterized protein.	0.883
D8TLT4_VOLCA	D8U5M8_VOLCA	D8TLT4	D8U5M8	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.870
D8TLT4_VOLCA	D8U6W4_VOLCA	D8TLT4	D8U6W4	Uncharacterized protein.	Chorein_N domain-containing protein.	0.928
D8TLT4_VOLCA	D8U794_VOLCA	D8TLT4	D8U794	Uncharacterized protein.	Uncharacterized protein.	0.439
D8TLT4_VOLCA	D8UAY9_VOLCA	D8TLT4	D8UAY9	Uncharacterized protein.	Uncharacterized protein.	0.666
D8TLT4_VOLCA	D8UB43_VOLCA	D8TLT4	D8UB43	Uncharacterized protein.	Uncharacterized protein.	0.439
D8TLT4_VOLCA	D8UB54_VOLCA	D8TLT4	D8UB54	Uncharacterized protein.	Uncharacterized protein.	0.439
D8TLT4_VOLCA	D8UH52_VOLCA	D8TLT4	D8UH52	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.922
D8TLT4_VOLCA	D8UMM1_VOLCA	D8TLT4	D8UMM1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.785
D8TLT4_VOLCA	apg3	D8TLT4	D8U1M2	Uncharacterized protein.	Autophagy-related protein 3.	0.910
D8TLT4_VOLCA	apg6	D8TLT4	D8U0G1	Uncharacterized protein.	Autophagy protein.	0.887
D8TLT4_VOLCA	apg7	D8TLT4	D8TZ27	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.887
D8TN22_VOLCA	D8TLT4_VOLCA	D8TN22	D8TLT4	Uncharacterized protein.	Uncharacterized protein.	0.785
D8TN22_VOLCA	D8TP71_VOLCA	D8TN22	D8TP71	Uncharacterized protein.	Uncharacterized protein.	0.667
D8TN22_VOLCA	D8TPY1_VOLCA	D8TN22	D8TPY1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.960