(41 nodes) Nuclear speck network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TZC3_VOLCA	Uncharacterized protein. (386 aa)
	D8UI23_VOLCA	Uncharacterized protein. (991 aa)
	D8UG79_VOLCA	Uncharacterized protein. (1631 aa)
	D8UG14_VOLCA	RRM domain-containing protein. (767 aa)
	D8UFE7_VOLCA	Uncharacterized protein. (2508 aa)
	D8UCI5_VOLCA	RRM domain-containing protein. (486 aa)
	D8UCH6_VOLCA	FHA domain-containing protein. (290 aa)
	D8U9V4_VOLCA	Uncharacterized protein. (245 aa)
	spl8	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (532 aa)
	D8U782_VOLCA	RRM domain-containing protein. (393 aa)
	D8U6V5_VOLCA	Uncharacterized protein. (287 aa)
	D8U5U1_VOLCA	RRM domain-containing protein. (817 aa)
	D8U5J6_VOLCA	RRM domain-containing protein. (294 aa)
	D8U525_VOLCA	hnRNP_Q_AcD domain-containing protein. (1173 aa)
	D8U4M8_VOLCA	zf-NOSIP domain-containing protein. (333 aa)
	D8U420_VOLCA	Uncharacterized protein. (1092 aa)
	D8U3T3_VOLCA	Uncharacterized protein. (562 aa)
	D8U346_VOLCA	Uncharacterized protein. (762 aa)
	D8U0F1_VOLCA	Uncharacterized protein. (513 aa)
	D8U053_VOLCA	Uncharacterized protein. (689 aa)
	D8TZD2_VOLCA	Uncharacterized protein. (500 aa)
	D8UIP9_VOLCA	HNHc domain-containing protein. (284 aa)
	D8TZ84_VOLCA	RRM domain-containing protein. (480 aa)
	D8TXR3_VOLCA	Uncharacterized protein. (101 aa)
	D8TXH3_VOLCA	RRM domain-containing protein. (82 aa)
	D8TTE3_VOLCA	Uncharacterized protein. (2821 aa)
	D8TSP6_VOLCA	RRM domain-containing protein. (139 aa)
	ard1	Zinc finger related protein. (667 aa)
	D8TS32_VOLCA	Uncharacterized protein; Belongs to the MT-A70-like family. (287 aa)
	D8TRF4_VOLCA	Uncharacterized protein. (729 aa)
	D8TRC1_VOLCA	Uncharacterized protein. (119 aa)
	D8TQU8_VOLCA	RRM domain-containing protein. (262 aa)
	D8TPD4_VOLCA	Uncharacterized protein. (243 aa)
	efg5	Elongation factor 2 (EF-2, EF-TU). (991 aa)
	D8TMQ3_VOLCA	Uncharacterized protein. (575 aa)
	D8TKV7_VOLCA	Uncharacterized protein. (2585 aa)
	D8TJJ4_VOLCA	Uncharacterized protein; Belongs to the MT-A70-like family. (245 aa)
	D8TIG4_VOLCA	Uncharacterized protein. (288 aa)
	D8TI93_VOLCA	RRM domain-containing protein. (242 aa)
	D8UJY9_VOLCA	Uncharacterized protein. (882 aa)
	D8UJ72_VOLCA	Uncharacterized protein. (294 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TI93_VOLCA	D8TIG4_VOLCA	D8TI93	D8TIG4	RRM domain-containing protein.	Uncharacterized protein.	0.862
D8TI93_VOLCA	D8TKV7_VOLCA	D8TI93	D8TKV7	RRM domain-containing protein.	Uncharacterized protein.	0.621
D8TI93_VOLCA	D8TQU8_VOLCA	D8TI93	D8TQU8	RRM domain-containing protein.	RRM domain-containing protein.	0.555
D8TI93_VOLCA	D8TRC1_VOLCA	D8TI93	D8TRC1	RRM domain-containing protein.	Uncharacterized protein.	0.701
D8TI93_VOLCA	D8TRF4_VOLCA	D8TI93	D8TRF4	RRM domain-containing protein.	Uncharacterized protein.	0.563
D8TI93_VOLCA	D8TSP6_VOLCA	D8TI93	D8TSP6	RRM domain-containing protein.	RRM domain-containing protein.	0.838
D8TI93_VOLCA	D8TXH3_VOLCA	D8TI93	D8TXH3	RRM domain-containing protein.	RRM domain-containing protein.	0.703
D8TI93_VOLCA	D8TZ84_VOLCA	D8TI93	D8TZ84	RRM domain-containing protein.	RRM domain-containing protein.	0.563
D8TI93_VOLCA	D8U5J6_VOLCA	D8TI93	D8U5J6	RRM domain-containing protein.	RRM domain-containing protein.	0.554
D8TI93_VOLCA	D8U6V5_VOLCA	D8TI93	D8U6V5	RRM domain-containing protein.	Uncharacterized protein.	0.763
D8TI93_VOLCA	D8U782_VOLCA	D8TI93	D8U782	RRM domain-containing protein.	RRM domain-containing protein.	0.859
D8TI93_VOLCA	D8U9V4_VOLCA	D8TI93	D8U9V4	RRM domain-containing protein.	Uncharacterized protein.	0.890
D8TI93_VOLCA	D8UCI5_VOLCA	D8TI93	D8UCI5	RRM domain-containing protein.	RRM domain-containing protein.	0.563
D8TI93_VOLCA	D8UG14_VOLCA	D8TI93	D8UG14	RRM domain-containing protein.	RRM domain-containing protein.	0.725
D8TI93_VOLCA	D8UI23_VOLCA	D8TI93	D8UI23	RRM domain-containing protein.	Uncharacterized protein.	0.485
D8TI93_VOLCA	D8UJ72_VOLCA	D8TI93	D8UJ72	RRM domain-containing protein.	Uncharacterized protein.	0.640
D8TI93_VOLCA	spl8	D8TI93	D8U7V9	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.698
D8TIG4_VOLCA	D8TI93_VOLCA	D8TIG4	D8TI93	Uncharacterized protein.	RRM domain-containing protein.	0.862
D8TIG4_VOLCA	D8TKV7_VOLCA	D8TIG4	D8TKV7	Uncharacterized protein.	Uncharacterized protein.	0.551
D8TIG4_VOLCA	D8TQU8_VOLCA	D8TIG4	D8TQU8	Uncharacterized protein.	RRM domain-containing protein.	0.961