(8 nodes) Protein sumoylation network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TNJ6_VOLCA	SP-RING-type domain-containing protein. (605 aa)
	D8TR96_VOLCA	Uncharacterized protein. (258 aa)
	D8TU26_VOLCA	Uncharacterized protein. (779 aa)
	D8U0B4_VOLCA	UBIQUITIN_CONJUGAT_2 domain-containing protein. (168 aa)
	D8U2G3_VOLCA	Small ubiquitin-related modifier. (105 aa)
	D8U6Q4_VOLCA	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (159 aa)
	D8U6V8_VOLCA	Uncharacterized protein. (409 aa)
	D8UBI3_VOLCA	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TNJ6_VOLCA	D8TR96_VOLCA	D8TNJ6	D8TR96	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.845
D8TNJ6_VOLCA	D8TU26_VOLCA	D8TNJ6	D8TU26	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.648
D8TNJ6_VOLCA	D8U0B4_VOLCA	D8TNJ6	D8U0B4	SP-RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.927
D8TNJ6_VOLCA	D8U2G3_VOLCA	D8TNJ6	D8U2G3	SP-RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.961
D8TNJ6_VOLCA	D8U6Q4_VOLCA	D8TNJ6	D8U6Q4	SP-RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.927
D8TNJ6_VOLCA	D8U6V8_VOLCA	D8TNJ6	D8U6V8	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.650
D8TNJ6_VOLCA	D8UBI3_VOLCA	D8TNJ6	D8UBI3	SP-RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.927
D8TR96_VOLCA	D8TNJ6_VOLCA	D8TR96	D8TNJ6	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.845
D8TR96_VOLCA	D8TU26_VOLCA	D8TR96	D8TU26	Uncharacterized protein.	Uncharacterized protein.	0.618
D8TR96_VOLCA	D8U0B4_VOLCA	D8TR96	D8U0B4	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.851
D8TR96_VOLCA	D8U2G3_VOLCA	D8TR96	D8U2G3	Uncharacterized protein.	Small ubiquitin-related modifier.	0.837
D8TR96_VOLCA	D8U6Q4_VOLCA	D8TR96	D8U6Q4	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.852
D8TR96_VOLCA	D8U6V8_VOLCA	D8TR96	D8U6V8	Uncharacterized protein.	Uncharacterized protein.	0.579
D8TR96_VOLCA	D8UBI3_VOLCA	D8TR96	D8UBI3	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.852
D8TU26_VOLCA	D8TNJ6_VOLCA	D8TU26	D8TNJ6	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.648
D8TU26_VOLCA	D8TR96_VOLCA	D8TU26	D8TR96	Uncharacterized protein.	Uncharacterized protein.	0.618
D8TU26_VOLCA	D8U0B4_VOLCA	D8TU26	D8U0B4	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.931
D8TU26_VOLCA	D8U2G3_VOLCA	D8TU26	D8U2G3	Uncharacterized protein.	Small ubiquitin-related modifier.	0.959
D8TU26_VOLCA	D8U6Q4_VOLCA	D8TU26	D8U6Q4	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.932
D8TU26_VOLCA	D8U6V8_VOLCA	D8TU26	D8U6V8	Uncharacterized protein.	Uncharacterized protein.	0.998