11 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8U3X1_VOLCA	Uncharacterized protein. (357 aa)
	D8TX34_VOLCA	WD_REPEATS_REGION domain-containing protein. (340 aa)
	D8U453_VOLCA	Uncharacterized protein. (995 aa)
	D8THQ9_VOLCA	Subunit of VPS-C complex. (1362 aa)
	D8TX33_VOLCA	Uncharacterized protein. (227 aa)
	D8TWX8_VOLCA	Uncharacterized protein. (3522 aa)
	vps33	Uncharacterized protein vps33; Belongs to the STXBP/unc-18/SEC1 family. (703 aa)
	D8UDN2_VOLCA	Uncharacterized protein. (889 aa)
	D8U3X3_VOLCA	Uncharacterized protein. (232 aa)
	D8U3X2_VOLCA	Pep3_Vps18 domain-containing protein. (642 aa)
	D8UKG1_VOLCA	VPS11_C domain-containing protein. (186 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8THQ9_VOLCA	D8TWX8_VOLCA	D8THQ9	D8TWX8	Subunit of VPS-C complex.	Uncharacterized protein.	0.904
D8THQ9_VOLCA	D8TX33_VOLCA	D8THQ9	D8TX33	Subunit of VPS-C complex.	Uncharacterized protein.	0.856
D8THQ9_VOLCA	D8TX34_VOLCA	D8THQ9	D8TX34	Subunit of VPS-C complex.	WD_REPEATS_REGION domain-containing protein.	0.856
D8THQ9_VOLCA	D8U3X1_VOLCA	D8THQ9	D8U3X1	Subunit of VPS-C complex.	Uncharacterized protein.	0.803
D8THQ9_VOLCA	D8U3X2_VOLCA	D8THQ9	D8U3X2	Subunit of VPS-C complex.	Pep3_Vps18 domain-containing protein.	0.803
D8THQ9_VOLCA	D8U3X3_VOLCA	D8THQ9	D8U3X3	Subunit of VPS-C complex.	Uncharacterized protein.	0.803
D8THQ9_VOLCA	D8U453_VOLCA	D8THQ9	D8U453	Subunit of VPS-C complex.	Uncharacterized protein.	0.941
D8THQ9_VOLCA	D8UDN2_VOLCA	D8THQ9	D8UDN2	Subunit of VPS-C complex.	Uncharacterized protein.	0.858
D8THQ9_VOLCA	D8UKG1_VOLCA	D8THQ9	D8UKG1	Subunit of VPS-C complex.	VPS11_C domain-containing protein.	0.858
D8THQ9_VOLCA	vps33	D8THQ9	D8TNT6	Subunit of VPS-C complex.	Uncharacterized protein vps33; Belongs to the STXBP/unc-18/SEC1 family.	0.936
D8TWX8_VOLCA	D8THQ9_VOLCA	D8TWX8	D8THQ9	Uncharacterized protein.	Subunit of VPS-C complex.	0.904
D8TWX8_VOLCA	D8TX33_VOLCA	D8TWX8	D8TX33	Uncharacterized protein.	Uncharacterized protein.	0.565
D8TWX8_VOLCA	D8TX34_VOLCA	D8TWX8	D8TX34	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.565
D8TWX8_VOLCA	D8U3X1_VOLCA	D8TWX8	D8U3X1	Uncharacterized protein.	Uncharacterized protein.	0.841
D8TWX8_VOLCA	D8U3X2_VOLCA	D8TWX8	D8U3X2	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.841
D8TWX8_VOLCA	D8U3X3_VOLCA	D8TWX8	D8U3X3	Uncharacterized protein.	Uncharacterized protein.	0.841
D8TWX8_VOLCA	D8U453_VOLCA	D8TWX8	D8U453	Uncharacterized protein.	Uncharacterized protein.	0.968
D8TWX8_VOLCA	D8UDN2_VOLCA	D8TWX8	D8UDN2	Uncharacterized protein.	Uncharacterized protein.	0.906
D8TWX8_VOLCA	D8UKG1_VOLCA	D8TWX8	D8UKG1	Uncharacterized protein.	VPS11_C domain-containing protein.	0.906
D8TWX8_VOLCA	vps33	D8TWX8	D8TNT6	Uncharacterized protein.	Uncharacterized protein vps33; Belongs to the STXBP/unc-18/SEC1 family.	0.967