(13 nodes) RNA (guanine-N7)-methylation network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lzy1b-1	Uncharacterized protein lzy1b-1. (90 aa)
	D8THF6_VOLCA	UPF0020 domain-containing protein. (475 aa)
	D8TXA3_VOLCA	Cation_ATPase_C domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (350 aa)
	D8TXA2_VOLCA	Uncharacterized protein. (101 aa)
	D8TYS8_VOLCA	Uncharacterized protein. (168 aa)
	D8TW75_VOLCA	WD_REPEATS_REGION domain-containing protein. (648 aa)
	D8U6I7_VOLCA	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family. (250 aa)
	lzy1b-2	Uncharacterized protein lzy1b-2. (90 aa)
	lzy1b-3	Uncharacterized protein lzy1b-3. (90 aa)
	D8TPB7_VOLCA	Uncharacterized protein. (123 aa)
	D8TMT4_VOLCA	Uncharacterized protein. (289 aa)
	D8TVP6_VOLCA	mRNA cap 0 methyltransferase domain-containing protein. (814 aa)
	D8TXN8_VOLCA	Uncharacterized protein. (222 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TMT4_VOLCA	D8TPB7_VOLCA	D8TMT4	D8TPB7	Uncharacterized protein.	Uncharacterized protein.	0.900
D8TMT4_VOLCA	D8TW75_VOLCA	D8TMT4	D8TW75	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.405
D8TMT4_VOLCA	D8TXN8_VOLCA	D8TMT4	D8TXN8	Uncharacterized protein.	Uncharacterized protein.	0.401
D8TMT4_VOLCA	D8U6I7_VOLCA	D8TMT4	D8U6I7	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.401
D8TPB7_VOLCA	D8TMT4_VOLCA	D8TPB7	D8TMT4	Uncharacterized protein.	Uncharacterized protein.	0.900
D8TPB7_VOLCA	D8TW75_VOLCA	D8TPB7	D8TW75	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.570
D8TPB7_VOLCA	D8TXN8_VOLCA	D8TPB7	D8TXN8	Uncharacterized protein.	Uncharacterized protein.	0.569
D8TPB7_VOLCA	D8U6I7_VOLCA	D8TPB7	D8U6I7	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.569
D8TPB7_VOLCA	lzy1b-1	D8TPB7	D8TTS0	Uncharacterized protein.	Uncharacterized protein lzy1b-1.	0.900
D8TPB7_VOLCA	lzy1b-2	D8TPB7	D8UMG2	Uncharacterized protein.	Uncharacterized protein lzy1b-2.	0.900
D8TPB7_VOLCA	lzy1b-3	D8TPB7	D8UMG3	Uncharacterized protein.	Uncharacterized protein lzy1b-3.	0.900
D8TW75_VOLCA	D8TMT4_VOLCA	D8TW75	D8TMT4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.405
D8TW75_VOLCA	D8TPB7_VOLCA	D8TW75	D8TPB7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.570
D8TW75_VOLCA	D8TXN8_VOLCA	D8TW75	D8TXN8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.984
D8TW75_VOLCA	D8U6I7_VOLCA	D8TW75	D8U6I7	WD_REPEATS_REGION domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.984
D8TW75_VOLCA	lzy1b-1	D8TW75	D8TTS0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein lzy1b-1.	0.405
D8TW75_VOLCA	lzy1b-2	D8TW75	D8UMG2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein lzy1b-2.	0.405
D8TW75_VOLCA	lzy1b-3	D8TW75	D8UMG3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein lzy1b-3.	0.405
D8TXA2_VOLCA	D8TXA3_VOLCA	D8TXA2	D8TXA3	Uncharacterized protein.	Cation_ATPase_C domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	0.604
D8TXA3_VOLCA	D8TXA2_VOLCA	D8TXA3	D8TXA2	Cation_ATPase_C domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	Uncharacterized protein.	0.604