51 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hstH2A-5	Histone H2A; Belongs to the histone H2A family. (130 aa)
	D8UFK9_VOLCA	TAF domain-containing protein. (463 aa)
	D8UIH7_VOLCA	Uncharacterized protein. (223 aa)
	D8UJG6_VOLCA	Histone domain-containing protein. (105 aa)
	hstH2B-13	Histone H2B; Belongs to the histone H2B family. (142 aa)
	hstH2B-4	Histone H2B; Belongs to the histone H2B family. (155 aa)
	D8U9I9_VOLCA	TAFII28 domain-containing protein. (208 aa)
	dp1	DP transcription factor. (721 aa)
	hstH3-11	Histone H3; Belongs to the histone H3 family. (135 aa)
	D8U4H0_VOLCA	CBFD_NFYB_HMF domain-containing protein. (157 aa)
	D8U432_VOLCA	E2_bind domain-containing protein. (435 aa)
	D8TZI6_VOLCA	CBFD_NFYB_HMF domain-containing protein. (249 aa)
	hstH2B-9	Histone H2B; Belongs to the histone H2B family. (156 aa)
	hstH2A-9	Histone H2A; Belongs to the histone H2A family. (131 aa)
	D8TZ69_VOLCA	Uncharacterized protein. (143 aa)
	D8TYP9_VOLCA	Uncharacterized protein. (988 aa)
	D8TXQ4_VOLCA	Uncharacterized protein. (276 aa)
	D8TU28_VOLCA	Histone H2A; Belongs to the histone H2A family. (129 aa)
	hstH2A-6	Histone H2A; Belongs to the histone H2A family. (129 aa)
	D8TT52_VOLCA	CBFD_NFYB_HMF domain-containing protein. (160 aa)
	D8TT34_VOLCA	CBFD_NFYB_HMF domain-containing protein. (102 aa)
	D8TSQ5_VOLCA	Histone H2A; Belongs to the histone H2A family. (131 aa)
	D8TSQ4_VOLCA	Uncharacterized protein. (151 aa)
	e2fr1	Uncharacterized protein e2fr1. (183 aa)
	hstH2B-12	Histone H2B; Belongs to the histone H2B family. (121 aa)
	D8TQ56_VOLCA	Histone H2A; Belongs to the histone H2A family. (169 aa)
	D8TPB7_VOLCA	Uncharacterized protein. (123 aa)
	hstH4-13	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
	hstH2A-11	Histone H2A; Belongs to the histone H2A family. (131 aa)
	hstH2B-11	Histone H2B; Belongs to the histone H2B family. (155 aa)
	D8TP10_VOLCA	Histone H2B; Belongs to the histone H2B family. (154 aa)
	hstH2A-10	Histone H2A; Belongs to the histone H2A family. (131 aa)
	hstH3-8	Histone H3; Belongs to the histone H3 family. (135 aa)
	hstH4-8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	hstH2B-7	Histone H2B; Belongs to the histone H2B family. (159 aa)
	hstH2A-7	Histone H2A; Belongs to the histone H2A family. (129 aa)
	hstH2B-14	Histone H2B; Belongs to the histone H2B family. (161 aa)
	hstH2B-15	Histone H2B; Belongs to the histone H2B family. (160 aa)
	D8TIV7_VOLCA	CBFD_NFYB_HMF domain-containing protein. (114 aa)
	D8TLN6_VOLCA	BTP domain-containing protein. (332 aa)
	D8TLS7_VOLCA	C2H2-type domain-containing protein. (340 aa)
	hstH2B-8	Histone H2B; Belongs to the histone H2B family. (154 aa)
	hstH2A-8	Histone H2A; Belongs to the histone H2A family. (131 aa)
	hstH2A-4	Histone H2A; Belongs to the histone H2A family. (129 aa)
	D8TM96_VOLCA	TFIID_20kDa domain-containing protein. (89 aa)
	hstH2B-1	Histone H2B; Belongs to the histone H2B family. (157 aa)
	D8UDE5_VOLCA	Uncharacterized protein. (350 aa)
	D8UC14_VOLCA	Histone H2A; Belongs to the histone H2A family. (144 aa)
	D8UBS3_VOLCA	Histone domain-containing protein. (143 aa)
	D8UBI5_VOLCA	Uncharacterized protein. (202 aa)
	hstH2B-2	Histone H2B; Belongs to the histone H2B family. (156 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TIV7_VOLCA	D8TT52_VOLCA	D8TIV7	D8TT52	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.978
D8TIV7_VOLCA	D8TZI6_VOLCA	D8TIV7	D8TZI6	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.945
D8TLN6_VOLCA	D8TM96_VOLCA	D8TLN6	D8TM96	BTP domain-containing protein.	TFIID_20kDa domain-containing protein.	0.996
D8TLN6_VOLCA	D8TXQ4_VOLCA	D8TLN6	D8TXQ4	BTP domain-containing protein.	Uncharacterized protein.	0.995
D8TLN6_VOLCA	D8TZ69_VOLCA	D8TLN6	D8TZ69	BTP domain-containing protein.	Uncharacterized protein.	0.978
D8TLN6_VOLCA	D8U9I9_VOLCA	D8TLN6	D8U9I9	BTP domain-containing protein.	TAFII28 domain-containing protein.	0.997
D8TLN6_VOLCA	D8UBS3_VOLCA	D8TLN6	D8UBS3	BTP domain-containing protein.	Histone domain-containing protein.	0.412
D8TLN6_VOLCA	D8UC14_VOLCA	D8TLN6	D8UC14	BTP domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.441
D8TLN6_VOLCA	D8UFK9_VOLCA	D8TLN6	D8UFK9	BTP domain-containing protein.	TAF domain-containing protein.	0.997
D8TLN6_VOLCA	D8UJG6_VOLCA	D8TLN6	D8UJG6	BTP domain-containing protein.	Histone domain-containing protein.	0.412
D8TLN6_VOLCA	hstH3-11	D8TLN6	D8U7Z2	BTP domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.412
D8TLN6_VOLCA	hstH3-8	D8TLN6	D8THQ2	BTP domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.412
D8TM96_VOLCA	D8TLN6_VOLCA	D8TM96	D8TLN6	TFIID_20kDa domain-containing protein.	BTP domain-containing protein.	0.996
D8TM96_VOLCA	D8TXQ4_VOLCA	D8TM96	D8TXQ4	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.998
D8TM96_VOLCA	D8TZ69_VOLCA	D8TM96	D8TZ69	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.997
D8TM96_VOLCA	D8U9I9_VOLCA	D8TM96	D8U9I9	TFIID_20kDa domain-containing protein.	TAFII28 domain-containing protein.	0.998
D8TM96_VOLCA	D8UC14_VOLCA	D8TM96	D8UC14	TFIID_20kDa domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.552
D8TM96_VOLCA	D8UFK9_VOLCA	D8TM96	D8UFK9	TFIID_20kDa domain-containing protein.	TAF domain-containing protein.	0.998
D8TM96_VOLCA	hstH4-13	D8TM96	D8TP21	TFIID_20kDa domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.415
D8TM96_VOLCA	hstH4-8	D8TM96	D8THQ3	TFIID_20kDa domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.415