(9 nodes) rRNA (guanine-N7)-methylation network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TYS8_VOLCA	Uncharacterized protein. (168 aa)
	lzy1b-3	Uncharacterized protein lzy1b-3. (90 aa)
	lzy1b-2	Uncharacterized protein lzy1b-2. (90 aa)
	D8TXA3_VOLCA	Cation_ATPase_C domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (350 aa)
	D8TXA2_VOLCA	Uncharacterized protein. (101 aa)
	lzy1b-1	Uncharacterized protein lzy1b-1. (90 aa)
	D8TPB7_VOLCA	Uncharacterized protein. (123 aa)
	D8TMT4_VOLCA	Uncharacterized protein. (289 aa)
	D8THF6_VOLCA	UPF0020 domain-containing protein. (475 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TMT4_VOLCA	D8TPB7_VOLCA	D8TMT4	D8TPB7	Uncharacterized protein.	Uncharacterized protein.	0.900
D8TPB7_VOLCA	D8TMT4_VOLCA	D8TPB7	D8TMT4	Uncharacterized protein.	Uncharacterized protein.	0.900
D8TPB7_VOLCA	lzy1b-1	D8TPB7	D8TTS0	Uncharacterized protein.	Uncharacterized protein lzy1b-1.	0.900
D8TPB7_VOLCA	lzy1b-2	D8TPB7	D8UMG2	Uncharacterized protein.	Uncharacterized protein lzy1b-2.	0.900
D8TPB7_VOLCA	lzy1b-3	D8TPB7	D8UMG3	Uncharacterized protein.	Uncharacterized protein lzy1b-3.	0.900
D8TXA2_VOLCA	D8TXA3_VOLCA	D8TXA2	D8TXA3	Uncharacterized protein.	Cation_ATPase_C domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	0.604
D8TXA3_VOLCA	D8TXA2_VOLCA	D8TXA3	D8TXA2	Cation_ATPase_C domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	Uncharacterized protein.	0.604
lzy1b-1	D8TPB7_VOLCA	D8TTS0	D8TPB7	Uncharacterized protein lzy1b-1.	Uncharacterized protein.	0.900
lzy1b-2	D8TPB7_VOLCA	D8UMG2	D8TPB7	Uncharacterized protein lzy1b-2.	Uncharacterized protein.	0.900
lzy1b-3	D8TPB7_VOLCA	D8UMG3	D8TPB7	Uncharacterized protein lzy1b-3.	Uncharacterized protein.	0.900