19 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TJ49_VOLCA	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family. (3872 aa)
	VSET4	Histone H3 Lys 4 methyltransferase. (2171 aa)
	D8TTS1_VOLCA	Uncharacterized protein. (466 aa)
	D8TUX7_VOLCA	Myb-like domain-containing protein. (501 aa)
	D8TXP6_VOLCA	Uncharacterized protein. (1746 aa)
	D8TY76_VOLCA	Helicase C-terminal domain-containing protein. (192 aa)
	D8TYP6_VOLCA	YL1_C domain-containing protein. (399 aa)
	D8TZI6_VOLCA	CBFD_NFYB_HMF domain-containing protein. (249 aa)
	D8U255_VOLCA	GLTSCR1 domain-containing protein. (191 aa)
	D8U262_VOLCA	Uncharacterized protein. (371 aa)
	D8U2X5_VOLCA	Uncharacterized protein. (2579 aa)
	D8UB73_VOLCA	Bromo domain-containing protein. (110 aa)
	D8UEK6_VOLCA	SWIB domain-containing protein. (586 aa)
	D8UEW1_VOLCA	PHD-type domain-containing protein. (102 aa)
	D8UJY3_VOLCA	Homeodomain protein. (1722 aa)
	D8TIU6_VOLCA	Uncharacterized protein. (3261 aa)
	UBCH1m	Ubiquitin carboxyl-terminal hydrolase. (316 aa)
	ponA	RuvB-like helicase; Belongs to the RuvB family. (455 aa)
	D8TJ41_VOLCA	RuvB-like helicase; Belongs to the RuvB family. (466 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TIU6_VOLCA	D8U262_VOLCA	D8TIU6	D8U262	Uncharacterized protein.	Uncharacterized protein.	0.934
D8TIU6_VOLCA	D8UEK6_VOLCA	D8TIU6	D8UEK6	Uncharacterized protein.	SWIB domain-containing protein.	0.814
D8TJ41_VOLCA	D8TJ49_VOLCA	D8TJ41	D8TJ49	RuvB-like helicase; Belongs to the RuvB family.	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	0.952
D8TJ41_VOLCA	D8TTS1_VOLCA	D8TJ41	D8TTS1	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.661
D8TJ41_VOLCA	D8TUX7_VOLCA	D8TJ41	D8TUX7	RuvB-like helicase; Belongs to the RuvB family.	Myb-like domain-containing protein.	0.983
D8TJ41_VOLCA	D8TY76_VOLCA	D8TJ41	D8TY76	RuvB-like helicase; Belongs to the RuvB family.	Helicase C-terminal domain-containing protein.	0.786
D8TJ41_VOLCA	D8TYP6_VOLCA	D8TJ41	D8TYP6	RuvB-like helicase; Belongs to the RuvB family.	YL1_C domain-containing protein.	0.973
D8TJ41_VOLCA	UBCH1m	D8TJ41	D9CJA1	RuvB-like helicase; Belongs to the RuvB family.	Ubiquitin carboxyl-terminal hydrolase.	0.685
D8TJ41_VOLCA	ponA	D8TJ41	A1YQY4	RuvB-like helicase; Belongs to the RuvB family.	RuvB-like helicase; Belongs to the RuvB family.	0.998
D8TJ49_VOLCA	D8TJ41_VOLCA	D8TJ49	D8TJ41	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	RuvB-like helicase; Belongs to the RuvB family.	0.952
D8TJ49_VOLCA	D8TUX7_VOLCA	D8TJ49	D8TUX7	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	Myb-like domain-containing protein.	0.981
D8TJ49_VOLCA	D8TY76_VOLCA	D8TJ49	D8TY76	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	Helicase C-terminal domain-containing protein.	0.706
D8TJ49_VOLCA	D8TYP6_VOLCA	D8TJ49	D8TYP6	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	YL1_C domain-containing protein.	0.898
D8TJ49_VOLCA	ponA	D8TJ49	A1YQY4	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	RuvB-like helicase; Belongs to the RuvB family.	0.995
D8TTS1_VOLCA	D8TJ41_VOLCA	D8TTS1	D8TJ41	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.661
D8TTS1_VOLCA	UBCH1m	D8TTS1	D9CJA1	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.740
D8TTS1_VOLCA	ponA	D8TTS1	A1YQY4	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.922
D8TUX7_VOLCA	D8TJ41_VOLCA	D8TUX7	D8TJ41	Myb-like domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.983
D8TUX7_VOLCA	D8TJ49_VOLCA	D8TUX7	D8TJ49	Myb-like domain-containing protein.	ATM/ATR-like kinase; Belongs to the PI3/PI4-kinase family.	0.981
D8TUX7_VOLCA	D8TY76_VOLCA	D8TUX7	D8TY76	Myb-like domain-containing protein.	Helicase C-terminal domain-containing protein.	0.824