(3 nodes) VCP-NPL4-UFD1 AAA ATPase complex network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TH41_VOLCA	Uncharacterized protein. (361 aa)
	cdc48	Uncharacterized protein cdc48; Belongs to the AAA ATPase family. (815 aa)
	D8TKQ1_VOLCA	UBX domain-containing protein. (418 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TH41_VOLCA	D8TKQ1_VOLCA	D8TH41	D8TKQ1	Uncharacterized protein.	UBX domain-containing protein.	0.900
D8TH41_VOLCA	cdc48	D8TH41	D8TIS4	Uncharacterized protein.	Uncharacterized protein cdc48; Belongs to the AAA ATPase family.	0.829
D8TKQ1_VOLCA	D8TH41_VOLCA	D8TKQ1	D8TH41	UBX domain-containing protein.	Uncharacterized protein.	0.900
D8TKQ1_VOLCA	cdc48	D8TKQ1	D8TIS4	UBX domain-containing protein.	Uncharacterized protein cdc48; Belongs to the AAA ATPase family.	0.829
cdc48	D8TH41_VOLCA	D8TIS4	D8TH41	Uncharacterized protein cdc48; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.829
cdc48	D8TKQ1_VOLCA	D8TIS4	D8TKQ1	Uncharacterized protein cdc48; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.829