(5 nodes) Endoplasmic reticulum chaperone complex network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hsp70G	Heat shock protein Hsp70G. (1103 aa)
	bip1	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family. (653 aa)
	bip2	Luminal binding protein Bip2. (878 aa)
	hsp70D	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family. (583 aa)
	hsp70F	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family. (537 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bip1	bip2	D8TT41	D8TTA3	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	Luminal binding protein Bip2.	0.901
bip1	hsp70D	D8TT41	D8TWN6	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family.	0.508
bip1	hsp70F	D8TT41	D8UDM2	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family.	0.556
bip1	hsp70G	D8TT41	D8TJA4	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp70G.	0.997
bip2	bip1	D8TTA3	D8TT41	Luminal binding protein Bip2.	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	0.901
bip2	hsp70D	D8TTA3	D8TWN6	Luminal binding protein Bip2.	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family.	0.508
bip2	hsp70F	D8TTA3	D8UDM2	Luminal binding protein Bip2.	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family.	0.553
bip2	hsp70G	D8TTA3	D8TJA4	Luminal binding protein Bip2.	Heat shock protein Hsp70G.	0.997
hsp70D	bip1	D8TWN6	D8TT41	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family.	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	0.508
hsp70D	bip2	D8TWN6	D8TTA3	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family.	Luminal binding protein Bip2.	0.508
hsp70D	hsp70G	D8TWN6	D8TJA4	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp70G.	0.840
hsp70F	bip1	D8UDM2	D8TT41	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family.	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	0.556
hsp70F	bip2	D8UDM2	D8TTA3	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family.	Luminal binding protein Bip2.	0.553
hsp70F	hsp70G	D8UDM2	D8TJA4	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp70G.	0.842
hsp70G	bip1	D8TJA4	D8TT41	Heat shock protein Hsp70G.	Luminal binding protein Bip1; Belongs to the heat shock protein 70 family.	0.997
hsp70G	bip2	D8TJA4	D8TTA3	Heat shock protein Hsp70G.	Luminal binding protein Bip2.	0.997
hsp70G	hsp70D	D8TJA4	D8TWN6	Heat shock protein Hsp70G.	Hsp70 protein Hsp70D; Belongs to the heat shock protein 70 family.	0.840
hsp70G	hsp70F	D8TJA4	D8UDM2	Heat shock protein Hsp70G.	Heat shock protein Hsp70F; Belongs to the heat shock protein 70 family.	0.842