50 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cog7	Component of oligomeric golgi complex 7. (957 aa)
	cog3	Component of oligomeric golgi complex 3. (923 aa)
	D8TUY7_VOLCA	AMMECR1 domain-containing protein. (242 aa)
	D8TU70_VOLCA	DSBA domain-containing protein. (304 aa)
	D8TS00_VOLCA	Uncharacterized protein. (136 aa)
	D8TRT0_VOLCA	DSBA domain-containing protein. (216 aa)
	cog6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (694 aa)
	D8TQQ3_VOLCA	Uncharacterized protein. (719 aa)
	D8TPN8_VOLCA	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (847 aa)
	vps33	Uncharacterized protein vps33; Belongs to the STXBP/unc-18/SEC1 family. (703 aa)
	D8TML2_VOLCA	Uncharacterized protein. (1098 aa)
	D8TLK5_VOLCA	COG2 domain-containing protein. (1489 aa)
	D8TL69_VOLCA	Uncharacterized protein. (925 aa)
	cog2	Component of oligomeric golgi complex 2. (1174 aa)
	cog8	Component of oligomeric golgi complex 8. (605 aa)
	D8THQ9_VOLCA	Subunit of VPS-C complex. (1362 aa)
	cog5	Component of oligomeric golgi complex 5. (835 aa)
	cog1	Component of oligomeric golgi complex 1. (1318 aa)
	D8U453_VOLCA	Uncharacterized protein. (995 aa)
	D8U512_VOLCA	Uncharacterized protein. (2915 aa)
	D8U535_VOLCA	Sec8_exocyst domain-containing protein. (678 aa)
	D8U536_VOLCA	Uncharacterized protein. (680 aa)
	D8U6H8_VOLCA	Uncharacterized protein. (1073 aa)
	D8U7K3_VOLCA	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily. (209 aa)
	bet3.2	Uncharacterized protein bet3.2. (135 aa)
	bet3.1	Uncharacterized protein bet3.1. (135 aa)
	D8U7Q8_VOLCA	Fe-S_biosyn domain-containing protein. (129 aa)
	cog4	Component of oligomeric golgi complex 4. (736 aa)
	D8UBU4_VOLCA	Uncharacterized protein. (2655 aa)
	D8UCR5_VOLCA	Uncharacterized protein. (1016 aa)
	D8UD92_VOLCA	RRM domain-containing protein. (2378 aa)
	D8UDL1_VOLCA	Uncharacterized protein. (1361 aa)
	D8UDN2_VOLCA	Uncharacterized protein. (889 aa)
	D8UDS3_VOLCA	PA domain-containing protein. (735 aa)
	D8UF59_VOLCA	Uncharacterized protein. (2232 aa)
	D8UFA0_VOLCA	Vps54 domain-containing protein. (1535 aa)
	D8UGX7_VOLCA	Uncharacterized protein. (783 aa)
	D8UI50_VOLCA	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (166 aa)
	vamp72	Uncharacterized protein vamp72; Belongs to the synaptobrevin family. (222 aa)
	D8UKG1_VOLCA	VPS11_C domain-containing protein. (186 aa)
	D8U3X3_VOLCA	Uncharacterized protein. (232 aa)
	D8U3X2_VOLCA	Pep3_Vps18 domain-containing protein. (642 aa)
	D8U3X1_VOLCA	Uncharacterized protein. (357 aa)
	D8U357_VOLCA	Sec5 domain-containing protein. (1598 aa)
	D8TZ31_VOLCA	Uncharacterized protein. (152 aa)
	D8TYL1_VOLCA	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (138 aa)
	D8TX34_VOLCA	WD_REPEATS_REGION domain-containing protein. (340 aa)
	D8TX33_VOLCA	Uncharacterized protein. (227 aa)
	D8TWX8_VOLCA	Uncharacterized protein. (3522 aa)
	D8TWG8_VOLCA	Uncharacterized protein. (202 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8THQ9_VOLCA	D8TWX8_VOLCA	D8THQ9	D8TWX8	Subunit of VPS-C complex.	Uncharacterized protein.	0.904
D8THQ9_VOLCA	D8TX33_VOLCA	D8THQ9	D8TX33	Subunit of VPS-C complex.	Uncharacterized protein.	0.856
D8THQ9_VOLCA	D8TX34_VOLCA	D8THQ9	D8TX34	Subunit of VPS-C complex.	WD_REPEATS_REGION domain-containing protein.	0.856
D8THQ9_VOLCA	D8U3X1_VOLCA	D8THQ9	D8U3X1	Subunit of VPS-C complex.	Uncharacterized protein.	0.803
D8THQ9_VOLCA	D8U3X2_VOLCA	D8THQ9	D8U3X2	Subunit of VPS-C complex.	Pep3_Vps18 domain-containing protein.	0.803
D8THQ9_VOLCA	D8U3X3_VOLCA	D8THQ9	D8U3X3	Subunit of VPS-C complex.	Uncharacterized protein.	0.803
D8THQ9_VOLCA	D8U453_VOLCA	D8THQ9	D8U453	Subunit of VPS-C complex.	Uncharacterized protein.	0.941
D8THQ9_VOLCA	D8UDN2_VOLCA	D8THQ9	D8UDN2	Subunit of VPS-C complex.	Uncharacterized protein.	0.858
D8THQ9_VOLCA	D8UKG1_VOLCA	D8THQ9	D8UKG1	Subunit of VPS-C complex.	VPS11_C domain-containing protein.	0.858
D8THQ9_VOLCA	cog3	D8THQ9	D8TV10	Subunit of VPS-C complex.	Component of oligomeric golgi complex 3.	0.404
D8THQ9_VOLCA	vps33	D8THQ9	D8TNT6	Subunit of VPS-C complex.	Uncharacterized protein vps33; Belongs to the STXBP/unc-18/SEC1 family.	0.936
D8TL69_VOLCA	D8TQQ3_VOLCA	D8TL69	D8TQQ3	Uncharacterized protein.	Uncharacterized protein.	0.988
D8TL69_VOLCA	D8U453_VOLCA	D8TL69	D8U453	Uncharacterized protein.	Uncharacterized protein.	0.548
D8TL69_VOLCA	D8UBU4_VOLCA	D8TL69	D8UBU4	Uncharacterized protein.	Uncharacterized protein.	0.476
D8TL69_VOLCA	D8UFA0_VOLCA	D8TL69	D8UFA0	Uncharacterized protein.	Vps54 domain-containing protein.	0.986
D8TL69_VOLCA	cog1	D8TL69	D8TGX2	Uncharacterized protein.	Component of oligomeric golgi complex 1.	0.817
D8TL69_VOLCA	cog2	D8TL69	D8TL51	Uncharacterized protein.	Component of oligomeric golgi complex 2.	0.814
D8TL69_VOLCA	cog3	D8TL69	D8TV10	Uncharacterized protein.	Component of oligomeric golgi complex 3.	0.772
D8TL69_VOLCA	cog4	D8TL69	D8U9K8	Uncharacterized protein.	Component of oligomeric golgi complex 4.	0.793
D8TL69_VOLCA	cog5	D8TL69	D8THI7	Uncharacterized protein.	Component of oligomeric golgi complex 5.	0.825