(15 nodes) Radical SAM network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8U7I4_VOLCA	MTTase N-terminal domain-containing protein. (401 aa)
	D8U5F6_VOLCA	Radical_SAM domain-containing protein. (438 aa)
	D8U172_VOLCA	Flavodoxin-like domain-containing protein. (736 aa)
	D8TZ51_VOLCA	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (600 aa)
	pflA	Pyruvate formate-lyase activating enzyme. (341 aa)
	D8TQ83_VOLCA	Iron hydrogenase assembly protein. (1198 aa)
	D8TN76_VOLCA	Elp3 domain-containing protein. (341 aa)
	D8TMG7_VOLCA	Uncharacterized protein. (453 aa)
	D8TK71_VOLCA	Elp3 domain-containing protein. (428 aa)
	D8TI10_VOLCA	Uncharacterized protein. (396 aa)
	D8THN9_VOLCA	MTTase N-terminal domain-containing protein. (529 aa)
	D8UBG9_VOLCA	Elp3 domain-containing protein. (1254 aa)
	D8UD38_VOLCA	Elp3 domain-containing protein. (298 aa)
	D8UF95_VOLCA	Elp3 domain-containing protein. (307 aa)
	D8UHT6_VOLCA	LIAS_N domain-containing protein. (347 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TI10_VOLCA	D8UD38_VOLCA	D8TI10	D8UD38	Uncharacterized protein.	Elp3 domain-containing protein.	0.433
D8TI10_VOLCA	D8UHT6_VOLCA	D8TI10	D8UHT6	Uncharacterized protein.	LIAS_N domain-containing protein.	0.475
D8TK71_VOLCA	D8U172_VOLCA	D8TK71	D8U172	Elp3 domain-containing protein.	Flavodoxin-like domain-containing protein.	0.403
D8TN76_VOLCA	D8U172_VOLCA	D8TN76	D8U172	Elp3 domain-containing protein.	Flavodoxin-like domain-containing protein.	0.402
D8TZ51_VOLCA	D8U172_VOLCA	D8TZ51	D8U172	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Flavodoxin-like domain-containing protein.	0.403
D8U172_VOLCA	D8TK71_VOLCA	D8U172	D8TK71	Flavodoxin-like domain-containing protein.	Elp3 domain-containing protein.	0.403
D8U172_VOLCA	D8TN76_VOLCA	D8U172	D8TN76	Flavodoxin-like domain-containing protein.	Elp3 domain-containing protein.	0.402
D8U172_VOLCA	D8TZ51_VOLCA	D8U172	D8TZ51	Flavodoxin-like domain-containing protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.403
D8U172_VOLCA	D8U7I4_VOLCA	D8U172	D8U7I4	Flavodoxin-like domain-containing protein.	MTTase N-terminal domain-containing protein.	0.413
D8U7I4_VOLCA	D8U172_VOLCA	D8U7I4	D8U172	MTTase N-terminal domain-containing protein.	Flavodoxin-like domain-containing protein.	0.413
D8UD38_VOLCA	D8TI10_VOLCA	D8UD38	D8TI10	Elp3 domain-containing protein.	Uncharacterized protein.	0.433
D8UD38_VOLCA	D8UHT6_VOLCA	D8UD38	D8UHT6	Elp3 domain-containing protein.	LIAS_N domain-containing protein.	0.904
D8UHT6_VOLCA	D8TI10_VOLCA	D8UHT6	D8TI10	LIAS_N domain-containing protein.	Uncharacterized protein.	0.475
D8UHT6_VOLCA	D8UD38_VOLCA	D8UHT6	D8UD38	LIAS_N domain-containing protein.	Elp3 domain-containing protein.	0.904