(70 nodes) Nucleic acid-binding, OB-fold network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8U0K1_VOLCA	Uncharacterized protein. (499 aa)
	rpt1	26S proteasome regulatory complex; Belongs to the AAA ATPase family. (426 aa)
	D8U135_VOLCA	Uncharacterized protein. (224 aa)
	eif1A	Eukaryotic translation initiation factor 1A; Belongs to the eIF-1A family. (141 aa)
	D8U1I6_VOLCA	Lysine--tRNA ligase. (493 aa)
	D8U2T9_VOLCA	Uncharacterized protein. (208 aa)
	D8U403_VOLCA	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (148 aa)
	D8U415_VOLCA	tRNA-binding domain-containing protein. (441 aa)
	D8U4Q9_VOLCA	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (816 aa)
	D8U519_VOLCA	BRCT domain-containing protein. (1842 aa)
	D8U5G1_VOLCA	tRNA-binding domain-containing protein. (231 aa)
	rrp5	rRNA processing protein Rrp5/programmed cell death protein 11. (2192 aa)
	D8U647_VOLCA	Lysine--tRNA ligase. (641 aa)
	D8U6D1_VOLCA	Uncharacterized protein. (201 aa)
	mcm4	DNA helicase; Belongs to the MCM family. (1001 aa)
	eif5B	Eukaryotic translation initiation factor 5B. (1817 aa)
	D8U866_VOLCA	CSD_1 domain-containing protein. (455 aa)
	lig1	DNA ligase. (648 aa)
	D8U0I6_VOLCA	Uncharacterized protein. (1534 aa)
	prpS1	Plastid/chloroplast ribosomal protein S1. (431 aa)
	D8UB01_VOLCA	tRNA-binding domain-containing protein. (254 aa)
	mcm5	DNA helicase; Belongs to the MCM family. (762 aa)
	D8UE35_VOLCA	Uncharacterized protein. (100 aa)
	mrpL2	Mitochondrial ribosomal protein L2. (356 aa)
	D8UFR1_VOLCA	S1 motif domain-containing protein. (830 aa)
	D8UFV5_VOLCA	S1-like domain-containing protein. (151 aa)
	mcm2	DNA helicase; Belongs to the MCM family. (896 aa)
	D8UGB4_VOLCA	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (1177 aa)
	D8TZ94_VOLCA	S1 motif domain-containing protein. (291 aa)
	rpt4	26S proteasome regulatory complex; Belongs to the AAA ATPase family. (361 aa)
	D8TY61_VOLCA	KH_dom_type_1 domain-containing protein. (224 aa)
	mcm3	DNA helicase; Belongs to the MCM family. (482 aa)
	eif2Ab	Eukaryotic translation initiation factor 2 alpha. (333 aa)
	rpt6	26S proteasome regulatory complex; Belongs to the AAA ATPase family. (396 aa)
	rpl8	Component of cytosolic 80S ribosome and 60S large subunit. (259 aa)
	D8TWP8_VOLCA	Uncharacterized protein. (201 aa)
	D8TW86_VOLCA	Uncharacterized protein. (356 aa)
	D8TW84_VOLCA	Uncharacterized protein. (757 aa)
	D8TW12_VOLCA	Uncharacterized protein. (838 aa)
	eif5A	Eukaryotic translation initiation factor 5A. (165 aa)
	mrpS12	Mitochondrial ribosomal protein S12. (252 aa)
	D8TVL7_VOLCA	Uncharacterized protein. (176 aa)
	D8TVJ4_VOLCA	Mcm10 domain-containing protein. (1732 aa)
	D8TV73_VOLCA	Uncharacterized protein. (122 aa)
	D8TUU8_VOLCA	C-type lectin domain-containing protein. (544 aa)
	D8TTP6_VOLCA	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (900 aa)
	D8TRX0_VOLCA	Uncharacterized protein. (1359 aa)
	D8TQL2_VOLCA	tRNA-binding domain-containing protein. (173 aa)
	D8TPX7_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (601 aa)
	rps28	Component of cytosolic 80S ribosome and 40S small subunit. (64 aa)
	D8TP12_VOLCA	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (1382 aa)
	rps11	Component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS17 family. (156 aa)
	EFTS	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (979 aa)
	D8TNJ5_VOLCA	RNB domain-containing protein. (1028 aa)
	D8TNE7_VOLCA	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	D8TN51_VOLCA	S1 motif domain-containing protein. (321 aa)
	D8TMZ6_VOLCA	BRCA2-like protein. (3700 aa)
	mcm7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (776 aa)
	rpt3	26S proteasome regulatory complex. (416 aa)
	mcm6	DNA helicase; Belongs to the MCM family. (714 aa)
	rpt5	26S proteasome regulatory complex; Belongs to the AAA ATPase family. (428 aa)
	D8TIL2_VOLCA	DNA_LIGASE_A3 domain-containing protein. (2638 aa)
	efp2	Uncharacterized protein efp2. (234 aa)
	D8THN9_VOLCA	MTTase N-terminal domain-containing protein. (529 aa)
	D8TH53_VOLCA	Uncharacterized protein; Belongs to the RNR ribonuclease family. (932 aa)
	D8TGV8_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (545 aa)
	nab1	Nucleic acid binding protein. (242 aa)
	rpt2	26S proteasome regulatory complex; Belongs to the AAA ATPase family. (444 aa)
	mcm8	Minichromosome maintenance protein 8; Belongs to the MCM family. (862 aa)
	efp1	Organellar elongation factor P (EF-P). (124 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TGV8_VOLCA	D8TMZ6_VOLCA	D8TGV8	D8TMZ6	AA_TRNA_LIGASE_II domain-containing protein.	BRCA2-like protein.	0.557
D8TGV8_VOLCA	D8TPX7_VOLCA	D8TGV8	D8TPX7	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.960
D8TGV8_VOLCA	D8TQL2_VOLCA	D8TGV8	D8TQL2	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein.	0.733
D8TGV8_VOLCA	D8U1I6_VOLCA	D8TGV8	D8U1I6	AA_TRNA_LIGASE_II domain-containing protein.	Lysine--tRNA ligase.	0.795
D8TGV8_VOLCA	D8U415_VOLCA	D8TGV8	D8U415	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein.	0.733
D8TGV8_VOLCA	D8U4Q9_VOLCA	D8TGV8	D8U4Q9	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.989
D8TGV8_VOLCA	D8U5G1_VOLCA	D8TGV8	D8U5G1	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein.	0.733
D8TGV8_VOLCA	D8U647_VOLCA	D8TGV8	D8U647	AA_TRNA_LIGASE_II domain-containing protein.	Lysine--tRNA ligase.	0.795
D8TGV8_VOLCA	D8UB01_VOLCA	D8TGV8	D8UB01	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein.	0.733
D8TGV8_VOLCA	D8UFR1_VOLCA	D8TGV8	D8UFR1	AA_TRNA_LIGASE_II domain-containing protein.	S1 motif domain-containing protein.	0.427
D8TGV8_VOLCA	EFTS	D8TGV8	D8TNM0	AA_TRNA_LIGASE_II domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.453
D8TGV8_VOLCA	eif2Ab	D8TGV8	D8TXZ1	AA_TRNA_LIGASE_II domain-containing protein.	Eukaryotic translation initiation factor 2 alpha.	0.538
D8TH53_VOLCA	D8TN51_VOLCA	D8TH53	D8TN51	Uncharacterized protein; Belongs to the RNR ribonuclease family.	S1 motif domain-containing protein.	0.956
D8TH53_VOLCA	D8TW86_VOLCA	D8TH53	D8TW86	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.429
D8TH53_VOLCA	D8TY61_VOLCA	D8TH53	D8TY61	Uncharacterized protein; Belongs to the RNR ribonuclease family.	KH_dom_type_1 domain-containing protein.	0.955
D8TH53_VOLCA	D8U6D1_VOLCA	D8TH53	D8U6D1	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Uncharacterized protein.	0.959
D8TH53_VOLCA	D8UFR1_VOLCA	D8TH53	D8UFR1	Uncharacterized protein; Belongs to the RNR ribonuclease family.	S1 motif domain-containing protein.	0.609
D8TH53_VOLCA	prpS1	D8TH53	D8U986	Uncharacterized protein; Belongs to the RNR ribonuclease family.	Plastid/chloroplast ribosomal protein S1.	0.429
D8TH53_VOLCA	rrp5	D8TH53	D8U606	Uncharacterized protein; Belongs to the RNR ribonuclease family.	rRNA processing protein Rrp5/programmed cell death protein 11.	0.520
D8THN9_VOLCA	D8TY61_VOLCA	D8THN9	D8TY61	MTTase N-terminal domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.862