31 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TIH4_VOLCA	Uncharacterized protein. (1240 aa)
	tubE	Epsilon tubulin; Belongs to the tubulin family. (482 aa)
	D8TLW9_VOLCA	Uncharacterized protein. (1582 aa)
	D8TPX8_VOLCA	Serine/threonine-protein phosphatase. (315 aa)
	D8TRV3_VOLCA	Uncharacterized protein. (725 aa)
	D8TUE8_VOLCA	Uncharacterized protein. (319 aa)
	Clasp	CLIP-associating protein. (794 aa)
	D8TWA8_VOLCA	Uncharacterized protein. (552 aa)
	D8TWB0_VOLCA	Uncharacterized protein. (553 aa)
	D8TX79_VOLCA	Uncharacterized protein. (1584 aa)
	tubA2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	D8TYT4_VOLCA	Rad21_Rec8_N domain-containing protein. (764 aa)
	D8U1Q6_VOLCA	Uncharacterized protein. (348 aa)
	smc3	Structural maintenance of chromosomes protein. (1261 aa)
	D8U462_VOLCA	Uncharacterized protein. (620 aa)
	tubB1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (443 aa)
	D8U711_VOLCA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (831 aa)
	D8U7A8_VOLCA	Uncharacterized protein. (327 aa)
	morA	Microtubule organizing protein mora. (2098 aa)
	D8U8T9_VOLCA	Uncharacterized protein. (1002 aa)
	D8U9M3_VOLCA	Uncharacterized protein. (300 aa)
	D8U9P9_VOLCA	Uncharacterized protein. (2023 aa)
	D8U9U5_VOLCA	Metallophos domain-containing protein. (346 aa)
	smc1	Structural maintenance of chromosomes protein 1. (1169 aa)
	D8UAZ1_VOLCA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1128 aa)
	D8UC16_VOLCA	Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (501 aa)
	D8UDK9_VOLCA	Rad21_Rec8_N domain-containing protein. (1142 aa)
	D8UEU8_VOLCA	Uncharacterized protein. (176 aa)
	D8UJP0_VOLCA	Serine/threonine-protein phosphatase. (165 aa)
	D8UKY5_VOLCA	Uncharacterized protein. (796 aa)
	tubA1b	Alpha tubulin; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (255 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TIH4_VOLCA	D8TWA8_VOLCA	D8TIH4	D8TWA8	Uncharacterized protein.	Uncharacterized protein.	0.757
D8TIH4_VOLCA	D8TWB0_VOLCA	D8TIH4	D8TWB0	Uncharacterized protein.	Uncharacterized protein.	0.757
D8TIH4_VOLCA	D8U9M3_VOLCA	D8TIH4	D8U9M3	Uncharacterized protein.	Uncharacterized protein.	0.826
D8TIH4_VOLCA	smc1	D8TIH4	D8UA74	Uncharacterized protein.	Structural maintenance of chromosomes protein 1.	0.441
D8TIH4_VOLCA	tubA1b	D8TIH4	D8UM23	Uncharacterized protein.	Alpha tubulin; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.711
D8TIH4_VOLCA	tubA2	D8TIH4	D8TXF3	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.711
D8TIH4_VOLCA	tubB1	D8TIH4	D8U4T0	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.711
D8TIH4_VOLCA	tubE	D8TIH4	D8TK46	Uncharacterized protein.	Epsilon tubulin; Belongs to the tubulin family.	0.711
D8TPX8_VOLCA	D8UC16_VOLCA	D8TPX8	D8UC16	Serine/threonine-protein phosphatase.	Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.	0.992
D8TPX8_VOLCA	D8UJP0_VOLCA	D8TPX8	D8UJP0	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.902
D8TPX8_VOLCA	tubA1b	D8TPX8	D8UM23	Serine/threonine-protein phosphatase.	Alpha tubulin; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.462
D8TPX8_VOLCA	tubA2	D8TPX8	D8TXF3	Serine/threonine-protein phosphatase.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.449
D8TPX8_VOLCA	tubB1	D8TPX8	D8U4T0	Serine/threonine-protein phosphatase.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.460
D8TRV3_VOLCA	D8U462_VOLCA	D8TRV3	D8U462	Uncharacterized protein.	Uncharacterized protein.	0.811
D8TRV3_VOLCA	D8U9P9_VOLCA	D8TRV3	D8U9P9	Uncharacterized protein.	Uncharacterized protein.	0.811
D8TRV3_VOLCA	smc1	D8TRV3	D8UA74	Uncharacterized protein.	Structural maintenance of chromosomes protein 1.	0.894
D8TRV3_VOLCA	smc3	D8TRV3	D8U213	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.887
D8TRV3_VOLCA	tubB1	D8TRV3	D8U4T0	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.419
D8TRV3_VOLCA	tubE	D8TRV3	D8TK46	Uncharacterized protein.	Epsilon tubulin; Belongs to the tubulin family.	0.419
D8TWA8_VOLCA	D8TIH4_VOLCA	D8TWA8	D8TIH4	Uncharacterized protein.	Uncharacterized protein.	0.757