28 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TJE8_VOLCA	Uncharacterized protein. (218 aa)
	D8TKR7_VOLCA	WD_REPEATS_REGION domain-containing protein. (734 aa)
	VSET4	Histone H3 Lys 4 methyltransferase. (2171 aa)
	hstH4-13	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
	D8TRF0_VOLCA	Uncharacterized protein. (1448 aa)
	pcgA	Polycomb group protein. (375 aa)
	D8TS05_VOLCA	Uncharacterized protein. (2642 aa)
	D8TTI3_VOLCA	Histone H3 lys4 methyltransferase. (118 aa)
	VASHH1	Histone H3 Lys 36 methyltransferase/ASH1. (2345 aa)
	D8TZ02_VOLCA	Uncharacterized protein. (1516 aa)
	mot1	Uncharacterized protein mot1. (517 aa)
	D8TZE2_VOLCA	CW-type domain-containing protein. (857 aa)
	VSET3	Histone H3 methyltransferase. (653 aa)
	D8U366_VOLCA	Uncharacterized protein. (1111 aa)
	VSET2	Histone H3 methyltransferase. (261 aa)
	VSET1	Histone H3 methyltransferase. (128 aa)
	D8U9A4_VOLCA	Uncharacterized protein. (1168 aa)
	vmp32	Metalloproteinase, extracellular matrix glycoprotein VMP32. (429 aa)
	VTX1	Histone H3 methyltransferase/Trithorax. (2029 aa)
	D8UDG3_VOLCA	PHD-type domain-containing protein. (1972 aa)
	D8UF77_VOLCA	TSPc domain-containing protein. (551 aa)
	ASH2L	Uncharacterized protein ASH2L. (353 aa)
	D8UI63_VOLCA	SET domain-containing protein. (65 aa)
	D8UI64_VOLCA	CXC domain-containing protein. (510 aa)
	D8UJV1_VOLCA	Uncharacterized protein. (355 aa)
	D8TH95_VOLCA	Uncharacterized protein. (789 aa)
	hstH4-8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	ssgA	Pherophorin-like ECM-glycoprotein SSG185. (352 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASH2L	D8TH95_VOLCA	D8UFI6	D8TH95	Uncharacterized protein ASH2L.	Uncharacterized protein.	0.664
ASH2L	D8TS05_VOLCA	D8UFI6	D8TS05	Uncharacterized protein ASH2L.	Uncharacterized protein.	0.533
ASH2L	D8TTI3_VOLCA	D8UFI6	D8TTI3	Uncharacterized protein ASH2L.	Histone H3 lys4 methyltransferase.	0.845
ASH2L	D8TZ02_VOLCA	D8UFI6	D8TZ02	Uncharacterized protein ASH2L.	Uncharacterized protein.	0.845
ASH2L	D8TZE2_VOLCA	D8UFI6	D8TZE2	Uncharacterized protein ASH2L.	CW-type domain-containing protein.	0.570
ASH2L	D8U366_VOLCA	D8UFI6	D8U366	Uncharacterized protein ASH2L.	Uncharacterized protein.	0.845
ASH2L	D8U9A4_VOLCA	D8UFI6	D8U9A4	Uncharacterized protein ASH2L.	Uncharacterized protein.	0.664
ASH2L	D8UDG3_VOLCA	D8UFI6	D8UDG3	Uncharacterized protein ASH2L.	PHD-type domain-containing protein.	0.664
ASH2L	D8UF77_VOLCA	D8UFI6	D8UF77	Uncharacterized protein ASH2L.	TSPc domain-containing protein.	0.570
ASH2L	D8UI63_VOLCA	D8UFI6	D8UI63	Uncharacterized protein ASH2L.	SET domain-containing protein.	0.632
ASH2L	D8UI64_VOLCA	D8UFI6	D8UI64	Uncharacterized protein ASH2L.	CXC domain-containing protein.	0.632
ASH2L	D8UJV1_VOLCA	D8UFI6	D8UJV1	Uncharacterized protein ASH2L.	Uncharacterized protein.	0.664
ASH2L	VASHH1	D8UFI6	D8TY38	Uncharacterized protein ASH2L.	Histone H3 Lys 36 methyltransferase/ASH1.	0.570
ASH2L	VSET1	D8UFI6	D8U8M3	Uncharacterized protein ASH2L.	Histone H3 methyltransferase.	0.664
ASH2L	VSET2	D8UFI6	D8U7V2	Uncharacterized protein ASH2L.	Histone H3 methyltransferase.	0.570
ASH2L	VSET3	D8UFI6	D8U227	Uncharacterized protein ASH2L.	Histone H3 methyltransferase.	0.533
ASH2L	VSET4	D8UFI6	D8TNR8	Uncharacterized protein ASH2L.	Histone H3 Lys 4 methyltransferase.	0.845
ASH2L	VTX1	D8UFI6	D8UBR4	Uncharacterized protein ASH2L.	Histone H3 methyltransferase/Trithorax.	0.845
ASH2L	hstH4-13	D8UFI6	D8TP21	Uncharacterized protein ASH2L.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.901
ASH2L	hstH4-8	D8UFI6	D8THQ3	Uncharacterized protein ASH2L.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.901