26 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hstH2B-13	Histone H2B; Belongs to the histone H2B family. (142 aa)
	hstH2B-7	Histone H2B; Belongs to the histone H2B family. (159 aa)
	hstH2B-14	Histone H2B; Belongs to the histone H2B family. (161 aa)
	hstH2B-15	Histone H2B; Belongs to the histone H2B family. (160 aa)
	rps27A	Ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit. (181 aa)
	D8TIU9_VOLCA	Mre11_DNA_bind domain-containing protein. (435 aa)
	D8TLL4_VOLCA	Uncharacterized protein. (370 aa)
	hstH2B-1	Histone H2B; Belongs to the histone H2B family. (157 aa)
	D8TMB8_VOLCA	Non-specific serine/threonine protein kinase; Belongs to the PI3/PI4-kinase family. (3699 aa)
	hstH2B-8	Histone H2B; Belongs to the histone H2B family. (154 aa)
	D8TP10_VOLCA	Histone H2B; Belongs to the histone H2B family. (154 aa)
	hstH2B-11	Histone H2B; Belongs to the histone H2B family. (155 aa)
	hstH4-13	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
	hstH2B-12	Histone H2B; Belongs to the histone H2B family. (121 aa)
	D8TSQ4_VOLCA	Uncharacterized protein. (151 aa)
	hstH2B-9	Histone H2B; Belongs to the histone H2B family. (156 aa)
	D8U596_VOLCA	Uncharacterized protein. (1755 aa)
	D8U788_VOLCA	Uncharacterized protein. (236 aa)
	D8U998_VOLCA	Uncharacterized protein. (819 aa)
	hstH2B-2	Histone H2B; Belongs to the histone H2B family. (156 aa)
	hstH2B-4	Histone H2B; Belongs to the histone H2B family. (155 aa)
	D8UEV2_VOLCA	AAA_23 domain-containing protein. (178 aa)
	D8UEV3_VOLCA	Zinc-hook domain-containing protein. (1167 aa)
	hstH4-8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	D8UI12_VOLCA	Uncharacterized protein. (543 aa)
	D8UJ60_VOLCA	RING-type domain-containing protein. (360 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TIU9_VOLCA	D8TLL4_VOLCA	D8TIU9	D8TLL4	Mre11_DNA_bind domain-containing protein.	Uncharacterized protein.	0.646
D8TIU9_VOLCA	D8TMB8_VOLCA	D8TIU9	D8TMB8	Mre11_DNA_bind domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the PI3/PI4-kinase family.	0.949
D8TIU9_VOLCA	D8U596_VOLCA	D8TIU9	D8U596	Mre11_DNA_bind domain-containing protein.	Uncharacterized protein.	0.785
D8TIU9_VOLCA	D8U788_VOLCA	D8TIU9	D8U788	Mre11_DNA_bind domain-containing protein.	Uncharacterized protein.	0.949
D8TIU9_VOLCA	D8U998_VOLCA	D8TIU9	D8U998	Mre11_DNA_bind domain-containing protein.	Uncharacterized protein.	0.502
D8TIU9_VOLCA	D8UEV2_VOLCA	D8TIU9	D8UEV2	Mre11_DNA_bind domain-containing protein.	AAA_23 domain-containing protein.	0.993
D8TIU9_VOLCA	D8UEV3_VOLCA	D8TIU9	D8UEV3	Mre11_DNA_bind domain-containing protein.	Zinc-hook domain-containing protein.	0.993
D8TIU9_VOLCA	D8UI12_VOLCA	D8TIU9	D8UI12	Mre11_DNA_bind domain-containing protein.	Uncharacterized protein.	0.502
D8TIU9_VOLCA	D8UJ60_VOLCA	D8TIU9	D8UJ60	Mre11_DNA_bind domain-containing protein.	RING-type domain-containing protein.	0.659
D8TIU9_VOLCA	hstH4-13	D8TIU9	D8TP21	Mre11_DNA_bind domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.758
D8TIU9_VOLCA	hstH4-8	D8TIU9	D8THQ3	Mre11_DNA_bind domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.758
D8TIU9_VOLCA	rps27A	D8TIU9	D8TIC0	Mre11_DNA_bind domain-containing protein.	Ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit.	0.622
D8TLL4_VOLCA	D8TIU9_VOLCA	D8TLL4	D8TIU9	Uncharacterized protein.	Mre11_DNA_bind domain-containing protein.	0.646
D8TLL4_VOLCA	D8TMB8_VOLCA	D8TLL4	D8TMB8	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the PI3/PI4-kinase family.	0.531
D8TLL4_VOLCA	D8U596_VOLCA	D8TLL4	D8U596	Uncharacterized protein.	Uncharacterized protein.	0.587
D8TLL4_VOLCA	D8U788_VOLCA	D8TLL4	D8U788	Uncharacterized protein.	Uncharacterized protein.	0.531
D8TLL4_VOLCA	D8UJ60_VOLCA	D8TLL4	D8UJ60	Uncharacterized protein.	RING-type domain-containing protein.	0.646
D8TLL4_VOLCA	hstH4-13	D8TLL4	D8TP21	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.443
D8TLL4_VOLCA	hstH4-8	D8TLL4	D8THQ3	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.443
D8TLL4_VOLCA	rps27A	D8TLL4	D8TIC0	Uncharacterized protein.	Ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit.	0.574