59 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hstH2B-4	Histone H2B; Belongs to the histone H2B family. (155 aa)
	D8TGV5_VOLCA	Uncharacterized protein. (919 aa)
	D8THM2_VOLCA	mRNA export protein-like protein. (353 aa)
	hstH4-8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	D8THX9_VOLCA	Uncharacterized protein. (1576 aa)
	D8THY6_VOLCA	Uncharacterized protein. (2493 aa)
	hstH2B-7	Histone H2B; Belongs to the histone H2B family. (159 aa)
	hstH2B-14	Histone H2B; Belongs to the histone H2B family. (161 aa)
	hstH2B-15	Histone H2B; Belongs to the histone H2B family. (160 aa)
	D8TIN3_VOLCA	Uncharacterized protein. (884 aa)
	D8TJQ7_VOLCA	FCP1 homology domain-containing protein. (316 aa)
	stpk15	Serine/threonine protein kinase 15. (294 aa)
	D8TKF8_VOLCA	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (309 aa)
	D8TKW5_VOLCA	Uncharacterized protein. (1590 aa)
	hstH2B-1	Histone H2B; Belongs to the histone H2B family. (157 aa)
	cnk1	NimA-related protein kinase 1. (507 aa)
	cnk7	NimA-related protein kinase 7. (1072 aa)
	D8TNB7_VOLCA	LNS2 domain-containing protein. (175 aa)
	hstH2B-8	Histone H2B; Belongs to the histone H2B family. (154 aa)
	cnk6	NimA-related protein kinase 6. (836 aa)
	D8TP10_VOLCA	Histone H2B; Belongs to the histone H2B family. (154 aa)
	hstH2B-11	Histone H2B; Belongs to the histone H2B family. (155 aa)
	hstH4-13	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
	D8TPW8_VOLCA	FCP1 homology domain-containing protein. (215 aa)
	hstH2B-12	Histone H2B; Belongs to the histone H2B family. (121 aa)
	D8TQG5_VOLCA	Uncharacterized protein. (711 aa)
	D8TQS2_VOLCA	Uncharacterized protein. (2339 aa)
	D8TRL4_VOLCA	TPR_MLP1_2 domain-containing protein. (2628 aa)
	D8TRU5_VOLCA	RRM Nup35-type domain-containing protein. (133 aa)
	D8TS40_VOLCA	Uncharacterized protein. (3501 aa)
	D8TSD6_VOLCA	Uncharacterized protein. (1476 aa)
	D8TSQ2_VOLCA	Uncharacterized protein. (741 aa)
	D8TSQ4_VOLCA	Uncharacterized protein. (151 aa)
	D8TTC1_VOLCA	Nuclear pore protein. (859 aa)
	D8TU14_VOLCA	Uncharacterized protein. (544 aa)
	D8TVG4_VOLCA	Uncharacterized protein. (1287 aa)
	smc4	Structural maintenance of chromosomes protein. (1239 aa)
	D8TZ83_VOLCA	SMC_N domain-containing protein. (1241 aa)
	hstH2B-9	Histone H2B; Belongs to the histone H2B family. (156 aa)
	D8U1A0_VOLCA	Uncharacterized protein. (486 aa)
	D8U385_VOLCA	Cnd1 domain-containing protein. (1678 aa)
	D8U4R9_VOLCA	Peptidase S59 domain-containing protein. (148 aa)
	D8U4S0_VOLCA	Nup96 domain-containing protein. (1083 aa)
	D8U6W3_VOLCA	CNDH2_N domain-containing protein. (300 aa)
	D8U711_VOLCA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (831 aa)
	D8U797_VOLCA	Uncharacterized protein. (1492 aa)
	D8U8S8_VOLCA	FCP1 homology domain-containing protein. (797 aa)
	D8U8T9_VOLCA	Uncharacterized protein. (1002 aa)
	D8U980_VOLCA	Uncharacterized protein. (1642 aa)
	D8U9W6_VOLCA	Uncharacterized protein. (308 aa)
	hstH2B-2	Histone H2B; Belongs to the histone H2B family. (156 aa)
	D8UAV7_VOLCA	BTB domain-containing protein. (1149 aa)
	D8UAZ1_VOLCA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1128 aa)
	D8UC14_VOLCA	Histone H2A; Belongs to the histone H2A family. (144 aa)
	D8UC30_VOLCA	Uncharacterized protein. (2956 aa)
	D8UD41_VOLCA	FCP1 homology domain-containing protein. (119 aa)
	D8UEY0_VOLCA	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (333 aa)
	D8UIA7_VOLCA	Uncharacterized protein. (431 aa)
	hstH2B-13	Histone H2B; Belongs to the histone H2B family. (142 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TGV5_VOLCA	D8THM2_VOLCA	D8TGV5	D8THM2	Uncharacterized protein.	mRNA export protein-like protein.	0.845
D8TGV5_VOLCA	D8TIN3_VOLCA	D8TGV5	D8TIN3	Uncharacterized protein.	Uncharacterized protein.	0.998
D8TGV5_VOLCA	D8TKW5_VOLCA	D8TGV5	D8TKW5	Uncharacterized protein.	Uncharacterized protein.	0.652
D8TGV5_VOLCA	D8TQG5_VOLCA	D8TGV5	D8TQG5	Uncharacterized protein.	Uncharacterized protein.	0.998
D8TGV5_VOLCA	D8TQS2_VOLCA	D8TGV5	D8TQS2	Uncharacterized protein.	Uncharacterized protein.	0.955
D8TGV5_VOLCA	D8TRL4_VOLCA	D8TGV5	D8TRL4	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.690
D8TGV5_VOLCA	D8TRU5_VOLCA	D8TGV5	D8TRU5	Uncharacterized protein.	RRM Nup35-type domain-containing protein.	0.957
D8TGV5_VOLCA	D8TSD6_VOLCA	D8TGV5	D8TSD6	Uncharacterized protein.	Uncharacterized protein.	0.965
D8TGV5_VOLCA	D8TSQ2_VOLCA	D8TGV5	D8TSQ2	Uncharacterized protein.	Uncharacterized protein.	0.652
D8TGV5_VOLCA	D8TTC1_VOLCA	D8TGV5	D8TTC1	Uncharacterized protein.	Nuclear pore protein.	0.968
D8TGV5_VOLCA	D8TU14_VOLCA	D8TGV5	D8TU14	Uncharacterized protein.	Uncharacterized protein.	0.960
D8TGV5_VOLCA	D8TVG4_VOLCA	D8TGV5	D8TVG4	Uncharacterized protein.	Uncharacterized protein.	0.814
D8TGV5_VOLCA	D8U1A0_VOLCA	D8TGV5	D8U1A0	Uncharacterized protein.	Uncharacterized protein.	0.814
D8TGV5_VOLCA	D8U4R9_VOLCA	D8TGV5	D8U4R9	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.814
D8TGV5_VOLCA	D8U4S0_VOLCA	D8TGV5	D8U4S0	Uncharacterized protein.	Nup96 domain-containing protein.	0.814
D8TGV5_VOLCA	D8U711_VOLCA	D8TGV5	D8U711	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.979
D8TGV5_VOLCA	D8U8T9_VOLCA	D8TGV5	D8U8T9	Uncharacterized protein.	Uncharacterized protein.	0.963
D8TGV5_VOLCA	D8U980_VOLCA	D8TGV5	D8U980	Uncharacterized protein.	Uncharacterized protein.	0.973
D8TGV5_VOLCA	D8U9W6_VOLCA	D8TGV5	D8U9W6	Uncharacterized protein.	Uncharacterized protein.	0.652
D8TGV5_VOLCA	D8UAV7_VOLCA	D8TGV5	D8UAV7	Uncharacterized protein.	BTB domain-containing protein.	0.928