19 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vmp3	Metalloproteinase, extracellular matrix glycoprotein VMP3. (709 aa)
	phI	Extracellular matrix glycoprotein pherophorin I. (512 aa)
	phS	Extracellular matrix glycoprotein pherophorin-S. (459 aa)
	tubA2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	phox	Alkaline phosphatase, secreted, phosphate-repressible. (1365 aa)
	rlsM	Uncharacterized protein rlsM. (1304 aa)
	gon167	GON167 protein. (774 aa)
	tubB1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (443 aa)
	glsA	Asymmetric division protein GlsA. (786 aa)
	mat3	Retinoblastoma-like protein. (1132 aa)
	dyhA	Flagellar alpha dynein. (4331 aa)
	chi1	Chitinase, lysozyme. (314 aa)
	vheA	Subtilisin-like serine protease for hatching. (1127 aa)
	phII	Extracellular matrix glycoprotein pherophorin II. (362 aa)
	cprA	Cysteine protease; Belongs to the peptidase C1 family. (658 aa)
	hsp70A	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family. (649 aa)
	SEF5	Extracellular matrix glycoprotein pherophorin-V9. (606 aa)
	s9	Metalloproteinase, extracellular matrix glycoprotein VMP1. (568 aa)
	regA	Somatic regenerator RegA. (1049 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chi1	cprA	D8UFB6	O65214	Chitinase, lysozyme.	Cysteine protease; Belongs to the peptidase C1 family.	0.482
chi1	phI	D8UFB6	D8TTC9	Chitinase, lysozyme.	Extracellular matrix glycoprotein pherophorin I.	0.482
chi1	phII	D8UFB6	D8UMH7	Chitinase, lysozyme.	Extracellular matrix glycoprotein pherophorin II.	0.482
chi1	phS	D8UFB6	D8TTQ2	Chitinase, lysozyme.	Extracellular matrix glycoprotein pherophorin-S.	0.482
chi1	s9	D8UFB6	Q8S9B4	Chitinase, lysozyme.	Metalloproteinase, extracellular matrix glycoprotein VMP1.	0.481
chi1	vheA	D8UFB6	D8UHN8	Chitinase, lysozyme.	Subtilisin-like serine protease for hatching.	0.484
chi1	vmp3	D8UFB6	D8TPL0	Chitinase, lysozyme.	Metalloproteinase, extracellular matrix glycoprotein VMP3.	0.494
cprA	chi1	O65214	D8UFB6	Cysteine protease; Belongs to the peptidase C1 family.	Chitinase, lysozyme.	0.482
cprA	phI	O65214	D8TTC9	Cysteine protease; Belongs to the peptidase C1 family.	Extracellular matrix glycoprotein pherophorin I.	0.482
cprA	phII	O65214	D8UMH7	Cysteine protease; Belongs to the peptidase C1 family.	Extracellular matrix glycoprotein pherophorin II.	0.482
cprA	phS	O65214	D8TTQ2	Cysteine protease; Belongs to the peptidase C1 family.	Extracellular matrix glycoprotein pherophorin-S.	0.482
cprA	s9	O65214	Q8S9B4	Cysteine protease; Belongs to the peptidase C1 family.	Metalloproteinase, extracellular matrix glycoprotein VMP1.	0.482
cprA	vheA	O65214	D8UHN8	Cysteine protease; Belongs to the peptidase C1 family.	Subtilisin-like serine protease for hatching.	0.491
cprA	vmp3	O65214	D8TPL0	Cysteine protease; Belongs to the peptidase C1 family.	Metalloproteinase, extracellular matrix glycoprotein VMP3.	0.482
dyhA	tubA2	D8U7P6	D8TXF3	Flagellar alpha dynein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.757
dyhA	tubB1	D8U7P6	D8U4T0	Flagellar alpha dynein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.907
glsA	hsp70A	D8U526	Q3I5Q5	Asymmetric division protein GlsA.	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	0.749
glsA	regA	D8U526	Q9ZNR9	Asymmetric division protein GlsA.	Somatic regenerator RegA.	0.520
hsp70A	glsA	Q3I5Q5	D8U526	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	Asymmetric division protein GlsA.	0.749
hsp70A	tubA2	Q3I5Q5	D8TXF3	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.712