10 items (Volvox carteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prfA	Profilin; Belongs to the profilin family. (130 aa)
	hsp70A	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family. (649 aa)
	mbo2	Coiled-coil protein required for normal flagellar motility. (1022 aa)
	upf3	Magnesium protoporphyrin chelatase. (1398 aa)
	D8U8H2_VOLCA	DUF3479 domain-containing protein. (2066 aa)
	phb1	Prohibitin. (316 aa)
	cct3	T-complex protein 1 subunit gamma. (558 aa)
	dnj1	Molecular chaperone. (424 aa)
	hstH4-13	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (100 aa)
	hstH4-8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8U8H2_VOLCA	cct3	D8U8H2	D8U243	DUF3479 domain-containing protein.	T-complex protein 1 subunit gamma.	0.506
D8U8H2_VOLCA	hstH4-13	D8U8H2	D8TP21	DUF3479 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.483
D8U8H2_VOLCA	hstH4-8	D8U8H2	D8THQ3	DUF3479 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.483
D8U8H2_VOLCA	mbo2	D8U8H2	D8UBV7	DUF3479 domain-containing protein.	Coiled-coil protein required for normal flagellar motility.	0.507
D8U8H2_VOLCA	phb1	D8U8H2	D8U4Q8	DUF3479 domain-containing protein.	Prohibitin.	0.469
D8U8H2_VOLCA	prfA	D8U8H2	A1YQX7	DUF3479 domain-containing protein.	Profilin; Belongs to the profilin family.	0.627
D8U8H2_VOLCA	upf3	D8U8H2	D8U8V7	DUF3479 domain-containing protein.	Magnesium protoporphyrin chelatase.	0.913
cct3	D8U8H2_VOLCA	D8U243	D8U8H2	T-complex protein 1 subunit gamma.	DUF3479 domain-containing protein.	0.506
cct3	dnj1	D8U243	D8TTG2	T-complex protein 1 subunit gamma.	Molecular chaperone.	0.414
cct3	hsp70A	D8U243	Q3I5Q5	T-complex protein 1 subunit gamma.	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	0.411
cct3	mbo2	D8U243	D8UBV7	T-complex protein 1 subunit gamma.	Coiled-coil protein required for normal flagellar motility.	0.503
cct3	phb1	D8U243	D8U4Q8	T-complex protein 1 subunit gamma.	Prohibitin.	0.622
dnj1	cct3	D8TTG2	D8U243	Molecular chaperone.	T-complex protein 1 subunit gamma.	0.414
dnj1	hsp70A	D8TTG2	Q3I5Q5	Molecular chaperone.	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	0.921
hsp70A	cct3	Q3I5Q5	D8U243	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	T-complex protein 1 subunit gamma.	0.411
hsp70A	dnj1	Q3I5Q5	D8TTG2	Heat-shock inducible Hsp70; Belongs to the heat shock protein 70 family.	Molecular chaperone.	0.921
hstH4-13	D8U8H2_VOLCA	D8TP21	D8U8H2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	DUF3479 domain-containing protein.	0.483
hstH4-13	prfA	D8TP21	A1YQX7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Profilin; Belongs to the profilin family.	0.444
hstH4-13	upf3	D8TP21	D8U8V7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Magnesium protoporphyrin chelatase.	0.483
hstH4-8	D8U8H2_VOLCA	D8THQ3	D8U8H2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	DUF3479 domain-containing protein.	0.483