(17 nodes) Ubiquitin homologues network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps27A	Ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit. (181 aa)
	D8UJR9_VOLCA	Uncharacterized protein. (304 aa)
	ubqC	Polyubiquitin. (153 aa)
	D8UA62_VOLCA	Uncharacterized protein. (464 aa)
	ubqB	Polyubiquitin. (229 aa)
	D8U8Q9_VOLCA	Ubiquitin-like domain-containing protein. (240 aa)
	rpl40	Component of cytosolic 80S ribosome and 60S large subunit. (69 aa)
	D8U4Y7_VOLCA	Ubiquitin-like domain-containing protein. (266 aa)
	ubqA	Polyubiquitin. (305 aa)
	D8U2G3_VOLCA	Small ubiquitin-related modifier. (105 aa)
	spl1	Splicing factor 3a, subunit 1. (898 aa)
	D8TT88_VOLCA	Ubiquitin-like domain-containing protein. (147 aa)
	D8TQP4_VOLCA	Uncharacterized protein. (366 aa)
	D8TK98_VOLCA	Ubiquitin-like domain-containing protein. (532 aa)
	D8TK39_VOLCA	Ubiquitin-like domain-containing protein. (159 aa)
	D8THD1_VOLCA	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (528 aa)
	D8THB1_VOLCA	Uncharacterized protein. (304 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8THD1_VOLCA	D8TQP4_VOLCA	D8THD1	D8TQP4	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Uncharacterized protein.	0.589
D8THD1_VOLCA	D8UA62_VOLCA	D8THD1	D8UA62	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Uncharacterized protein.	0.494
D8THD1_VOLCA	rpl40	D8THD1	D8U547	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Component of cytosolic 80S ribosome and 60S large subunit.	0.818
D8THD1_VOLCA	rps27A	D8THD1	D8TIC0	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit.	0.859
D8TK39_VOLCA	D8UA62_VOLCA	D8TK39	D8UA62	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.513
D8TQP4_VOLCA	D8THD1_VOLCA	D8TQP4	D8THD1	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.589
D8TQP4_VOLCA	D8TT88_VOLCA	D8TQP4	D8TT88	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.493
D8TQP4_VOLCA	D8U2G3_VOLCA	D8TQP4	D8U2G3	Uncharacterized protein.	Small ubiquitin-related modifier.	0.785
D8TQP4_VOLCA	D8U4Y7_VOLCA	D8TQP4	D8U4Y7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.589
D8TQP4_VOLCA	D8U8Q9_VOLCA	D8TQP4	D8U8Q9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.493
D8TQP4_VOLCA	D8UA62_VOLCA	D8TQP4	D8UA62	Uncharacterized protein.	Uncharacterized protein.	0.905
D8TQP4_VOLCA	D8UJR9_VOLCA	D8TQP4	D8UJR9	Uncharacterized protein.	Uncharacterized protein.	0.683
D8TQP4_VOLCA	rpl40	D8TQP4	D8U547	Uncharacterized protein.	Component of cytosolic 80S ribosome and 60S large subunit.	0.976
D8TQP4_VOLCA	rps27A	D8TQP4	D8TIC0	Uncharacterized protein.	Ribosomal protein S27A component of cytosolic 80S ribosome and 40S small subunit.	0.928
D8TQP4_VOLCA	ubqA	D8TQP4	D8U474	Uncharacterized protein.	Polyubiquitin.	0.493
D8TQP4_VOLCA	ubqB	D8TQP4	D8U995	Uncharacterized protein.	Polyubiquitin.	0.493
D8TQP4_VOLCA	ubqC	D8TQP4	D8UEE9	Uncharacterized protein.	Polyubiquitin.	0.493
D8TT88_VOLCA	D8TQP4_VOLCA	D8TT88	D8TQP4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.493
D8TT88_VOLCA	D8UA62_VOLCA	D8TT88	D8UA62	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.416
D8TT88_VOLCA	rpl40	D8TT88	D8U547	Ubiquitin-like domain-containing protein.	Component of cytosolic 80S ribosome and 60S large subunit.	0.686