(44 nodes) Aminoacyl-tRNA biosynthesis network (Volvox carteri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8TGV8_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (545 aa)
	D8TH65_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (779 aa)
	D8TIC4_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (691 aa)
	GATA	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). (381 aa)
	D8TJI0_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1098 aa)
	D8TLK1_VOLCA	B5 domain-containing protein. (667 aa)
	D8TN84_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (403 aa)
	D8TPE3_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (643 aa)
	D8TPX7_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (601 aa)
	D8TQ63_VOLCA	Uncharacterized protein. (509 aa)
	D8TQJ5_VOLCA	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (980 aa)
	D8TR45_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (938 aa)
	D8TUY8_VOLCA	Uncharacterized protein. (1069 aa)
	D8TV36_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (472 aa)
	D8TVU1_VOLCA	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (1143 aa)
	D8TWM5_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (983 aa)
	GATB	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily. (519 aa)
	D8U043_VOLCA	Uncharacterized protein. (829 aa)
	D8U0K7_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1197 aa)
	D8U1I6_VOLCA	Lysine--tRNA ligase. (493 aa)
	D8U2E2_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1034 aa)
	D8U3E7_VOLCA	Uncharacterized protein. (692 aa)
	D8U3K7_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (393 aa)
	D8U3P4_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (430 aa)
	D8U425_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (347 aa)
	D8U4L7_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (516 aa)
	D8U4Q9_VOLCA	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (816 aa)
	D8U4R4_VOLCA	Uncharacterized protein. (415 aa)
	D8U602_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (618 aa)
	D8U647_VOLCA	Lysine--tRNA ligase. (641 aa)
	D8U6A6_VOLCA	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (522 aa)
	D8U6R9_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (454 aa)
	D8U7U8_VOLCA	Uncharacterized protein. (137 aa)
	D8U895_VOLCA	Uncharacterized protein. (397 aa)
	D8UA18_VOLCA	Tyrosine--tRNA ligase. (520 aa)
	D8UBB8_VOLCA	Uncharacterized protein. (650 aa)
	D8UCC7_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (501 aa)
	D8UCG3_VOLCA	O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis. (557 aa)
	D8UF20_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (483 aa)
	D8UFK6_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (834 aa)
	D8UHB4_VOLCA	GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (752 aa)
	D8UIN4_VOLCA	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (656 aa)
	D8UJ31_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (446 aa)
	D8UK85_VOLCA	AA_TRNA_LIGASE_II domain-containing protein. (563 aa)

Your Current Organism:

Volvox carteri

NCBI taxonomy Id: 3068
Other names: V. carteri f. nagariensis, Volvox carteri f. nagariensis, Volvox carteri f. nagariensis M.O.P.Iyengar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8TGV8_VOLCA	D8TH65_VOLCA	D8TGV8	D8TH65	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.947
D8TGV8_VOLCA	D8TJI0_VOLCA	D8TGV8	D8TJI0	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.923
D8TGV8_VOLCA	D8TLK1_VOLCA	D8TGV8	D8TLK1	AA_TRNA_LIGASE_II domain-containing protein.	B5 domain-containing protein.	0.573
D8TGV8_VOLCA	D8TN84_VOLCA	D8TGV8	D8TN84	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.601
D8TGV8_VOLCA	D8TPE3_VOLCA	D8TGV8	D8TPE3	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.749
D8TGV8_VOLCA	D8TPX7_VOLCA	D8TGV8	D8TPX7	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.960
D8TGV8_VOLCA	D8TR45_VOLCA	D8TGV8	D8TR45	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.718
D8TGV8_VOLCA	D8TV36_VOLCA	D8TGV8	D8TV36	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.539
D8TGV8_VOLCA	D8TVU1_VOLCA	D8TGV8	D8TVU1	AA_TRNA_LIGASE_II domain-containing protein.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.560
D8TGV8_VOLCA	D8TWM5_VOLCA	D8TGV8	D8TWM5	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.407
D8TGV8_VOLCA	D8U0K7_VOLCA	D8TGV8	D8U0K7	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.935
D8TGV8_VOLCA	D8U1I6_VOLCA	D8TGV8	D8U1I6	AA_TRNA_LIGASE_II domain-containing protein.	Lysine--tRNA ligase.	0.795
D8TGV8_VOLCA	D8U2E2_VOLCA	D8TGV8	D8U2E2	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.768
D8TGV8_VOLCA	D8U3E7_VOLCA	D8TGV8	D8U3E7	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.754
D8TGV8_VOLCA	D8U3K7_VOLCA	D8TGV8	D8U3K7	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.463
D8TGV8_VOLCA	D8U425_VOLCA	D8TGV8	D8U425	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.542
D8TGV8_VOLCA	D8U4L7_VOLCA	D8TGV8	D8U4L7	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.539
D8TGV8_VOLCA	D8U4Q9_VOLCA	D8TGV8	D8U4Q9	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.989
D8TGV8_VOLCA	D8U602_VOLCA	D8TGV8	D8U602	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.819
D8TGV8_VOLCA	D8U647_VOLCA	D8TGV8	D8U647	AA_TRNA_LIGASE_II domain-containing protein.	Lysine--tRNA ligase.	0.795