(6 nodes) Mitochondrial outer membrane translocase complex network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_08739	Bac_surface_Ag domain-containing protein. (512 aa)
	CHGG_07730	Uncharacterized protein. (321 aa)
	CHGG_07069	Uncharacterized protein. (594 aa)
	CHGG_04497	Uncharacterized protein. (191 aa)
	CHGG_01949	Tom37 domain-containing protein. (455 aa)
	CHGG_00593	Uncharacterized protein. (675 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00593	CHGG_01949	Q2HGR1	Q2HCV5	Uncharacterized protein.	Tom37 domain-containing protein.	0.745
CHGG_00593	CHGG_04497	Q2HGR1	Q2H149	Uncharacterized protein.	Uncharacterized protein.	0.500
CHGG_00593	CHGG_07069	Q2HGR1	Q2GY85	Uncharacterized protein.	Uncharacterized protein.	0.483
CHGG_00593	CHGG_07730	Q2HGR1	Q2GWC4	Uncharacterized protein.	Uncharacterized protein.	0.914
CHGG_00593	CHGG_08739	Q2HGR1	Q2GTG5	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.963
CHGG_01949	CHGG_00593	Q2HCV5	Q2HGR1	Tom37 domain-containing protein.	Uncharacterized protein.	0.745
CHGG_01949	CHGG_04497	Q2HCV5	Q2H149	Tom37 domain-containing protein.	Uncharacterized protein.	0.694
CHGG_01949	CHGG_07069	Q2HCV5	Q2GY85	Tom37 domain-containing protein.	Uncharacterized protein.	0.509
CHGG_01949	CHGG_07730	Q2HCV5	Q2GWC4	Tom37 domain-containing protein.	Uncharacterized protein.	0.957
CHGG_01949	CHGG_08739	Q2HCV5	Q2GTG5	Tom37 domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.993
CHGG_04497	CHGG_00593	Q2H149	Q2HGR1	Uncharacterized protein.	Uncharacterized protein.	0.500
CHGG_04497	CHGG_01949	Q2H149	Q2HCV5	Uncharacterized protein.	Tom37 domain-containing protein.	0.694
CHGG_04497	CHGG_07069	Q2H149	Q2GY85	Uncharacterized protein.	Uncharacterized protein.	0.994
CHGG_04497	CHGG_07730	Q2H149	Q2GWC4	Uncharacterized protein.	Uncharacterized protein.	0.985
CHGG_04497	CHGG_08739	Q2H149	Q2GTG5	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.625
CHGG_07069	CHGG_00593	Q2GY85	Q2HGR1	Uncharacterized protein.	Uncharacterized protein.	0.483
CHGG_07069	CHGG_01949	Q2GY85	Q2HCV5	Uncharacterized protein.	Tom37 domain-containing protein.	0.509
CHGG_07069	CHGG_04497	Q2GY85	Q2H149	Uncharacterized protein.	Uncharacterized protein.	0.994
CHGG_07069	CHGG_07730	Q2GY85	Q2GWC4	Uncharacterized protein.	Uncharacterized protein.	0.966
CHGG_07069	CHGG_08739	Q2GY85	Q2GTG5	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.602