(10 nodes) Maltose acetyltransferase, and Alpha-oxidation of phytanate network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_10463	Beta-lactamase domain-containing protein. (374 aa)
	CHGG_08641	Zn(2)-C6 fungal-type domain-containing protein. (722 aa)
	CHGG_07400	Uncharacterized protein. (326 aa)
	CHGG_05256	Zn(2)-C6 fungal-type domain-containing protein. (279 aa)
	CHGG_05077	Uncharacterized protein. (292 aa)
	CHGG_04306	Uncharacterized protein. (224 aa)
	CHGG_05401	Uncharacterized protein. (180 aa)
	CHGG_00318	Mac domain-containing protein. (100 aa)
	CHGG_00266	MFS domain-containing protein. (659 aa)
	CHGG_00112	Uncharacterized protein. (395 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00112	CHGG_04306	Q2HI42	Q2H1P0	Uncharacterized protein.	Uncharacterized protein.	0.513
CHGG_00266	CHGG_04306	Q2HHN8	Q2H1P0	MFS domain-containing protein.	Uncharacterized protein.	0.513
CHGG_04306	CHGG_00112	Q2H1P0	Q2HI42	Uncharacterized protein.	Uncharacterized protein.	0.513
CHGG_04306	CHGG_00266	Q2H1P0	Q2HHN8	Uncharacterized protein.	MFS domain-containing protein.	0.513
CHGG_04306	CHGG_08641	Q2H1P0	Q2GTR3	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.513
CHGG_04306	CHGG_10463	Q2H1P0	Q2GNJ1	Uncharacterized protein.	Beta-lactamase domain-containing protein.	0.449
CHGG_08641	CHGG_04306	Q2GTR3	Q2H1P0	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.513
CHGG_10463	CHGG_04306	Q2GNJ1	Q2H1P0	Beta-lactamase domain-containing protein.	Uncharacterized protein.	0.449