(13 nodes) Sphingolipid de novo biosynthesis network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_10899	Uncharacterized protein. (580 aa)
	CHGG_10645	MFS domain-containing protein. (551 aa)
	CHGG_10019	MFS domain-containing protein. (561 aa)
	CHGG_09994	MFS domain-containing protein. (658 aa)
	CHGG_09833	MFS domain-containing protein. (584 aa)
	CHGG_09096	MFS domain-containing protein. (622 aa)
	CHGG_08483	MFS domain-containing protein. (603 aa)
	CHGG_07029	Uncharacterized protein. (521 aa)
	CHGG_04872	MFS domain-containing protein. (698 aa)
	CHGG_04020	MFS domain-containing protein. (281 aa)
	CHGG_03841	Uncharacterized protein. (991 aa)
	CHGG_06798	MFS domain-containing protein. (750 aa)
	CHGG_00244	MFS domain-containing protein. (561 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00244	CHGG_10899	Q2HHR0	Q2GMA5	MFS domain-containing protein.	Uncharacterized protein.	0.405
CHGG_04020	CHGG_07029	Q2H2H6	Q2GYC5	MFS domain-containing protein.	Uncharacterized protein.	0.436
CHGG_04020	CHGG_10899	Q2H2H6	Q2GMA5	MFS domain-containing protein.	Uncharacterized protein.	0.425
CHGG_07029	CHGG_04020	Q2GYC5	Q2H2H6	Uncharacterized protein.	MFS domain-containing protein.	0.436
CHGG_10019	CHGG_10899	Q2GPT5	Q2GMA5	MFS domain-containing protein.	Uncharacterized protein.	0.437
CHGG_10899	CHGG_00244	Q2GMA5	Q2HHR0	Uncharacterized protein.	MFS domain-containing protein.	0.405
CHGG_10899	CHGG_04020	Q2GMA5	Q2H2H6	Uncharacterized protein.	MFS domain-containing protein.	0.425
CHGG_10899	CHGG_10019	Q2GMA5	Q2GPT5	Uncharacterized protein.	MFS domain-containing protein.	0.437